BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0405500 Os04g0405500|AK063263
(299 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0405500 Conserved hypothetical protein 289 2e-78
Os02g0526700 Conserved hypothetical protein 104 7e-23
>Os04g0405500 Conserved hypothetical protein
Length = 299
Score = 289 bits (739), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 166/299 (55%), Positives = 166/299 (55%)
Query: 1 SRRRIQDPVVRSFACGASAAGGLKRSKSXXXXXXXXXXXXXXXXXXXXXDSPRKKXXXXX 60
SRRRIQDPVVRSFACGASAAGGLKRSKS DSPRKK
Sbjct: 1 SRRRIQDPVVRSFACGASAAGGLKRSKSVAPRPEETTPVTAPAPSAVTADSPRKKSFWSF 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEAIVEPDXXXXX 120
LEAIVEPD
Sbjct: 61 LYSSSSSSSGGHQGSASMANGGGGGGASVRRKSVSVASASSASLGRRLEAIVEPDSPGRR 120
Query: 121 XXXXXXXXXXXXXXXXRSVGCGSRSFSGDFLERLSTGFGDCALRRVESHREPKPKSSAGA 180
RSVGCGSRSFSGDFLERLSTGFGDCALRRVESHREPKPKSSAGA
Sbjct: 121 SEGSSSSSFGRKVARSRSVGCGSRSFSGDFLERLSTGFGDCALRRVESHREPKPKSSAGA 180
Query: 181 LAHLGGNHSAAGNGDDDEYESTQQHRIKCXXXXXXXXXXXXXTSSSYWLXXXXXXXXXXX 240
LAHLGGNHSAAGNGDDDEYESTQQHRIKC TSSSYWL
Sbjct: 181 LAHLGGNHSAAGNGDDDEYESTQQHRIKCAGFFGGLGAAPPPTSSSYWLSAADGATAAAP 240
Query: 241 XXXXXXXXSHRSWAWALASPMRALRPTXXXXXXXIMAAPHNRGGVSGNGGMAMAAVATS 299
SHRSWAWALASPMRALRPT IMAAPHNRGGVSGNGGMAMAAVATS
Sbjct: 241 SARTHGARSHRSWAWALASPMRALRPTSSSSSKSIMAAPHNRGGVSGNGGMAMAAVATS 299
>Os02g0526700 Conserved hypothetical protein
Length = 445
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 72/134 (53%), Positives = 78/134 (58%), Gaps = 10/134 (7%)
Query: 137 RSVGCGSRSFSGDFLERLSTGFGDCALRRVESHREPKPKSSAGALAHLGGNHSAAGNGDD 196
RSVGCGSRSFSGDFLER+S GFGDC LRRVES REPKP + AL HLGG + DD
Sbjct: 270 RSVGCGSRSFSGDFLERISNGFGDCTLRRVESQREPKP-NKMRALGHLGGGGGGGADDDD 328
Query: 197 DEYESTQ-QHRIKCXXXXXXXXXXXXXTSSSYWLXXXXXXXXXXXXXXXXXX--XSHRSW 253
D+ + Q QHRIKC + SYWL SHRSW
Sbjct: 329 DDDDVYQHQHRIKC-----AGFFGGMGPTPSYWLSAAEGAATAGGVGGARKLGGRSHRSW 383
Query: 254 AW-ALASPMRALRP 266
AW ALASPMRALRP
Sbjct: 384 AWTALASPMRALRP 397
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.128 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,574,386
Number of extensions: 220734
Number of successful extensions: 787
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 782
Number of HSP's successfully gapped: 2
Length of query: 299
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 199
Effective length of database: 11,814,401
Effective search space: 2351065799
Effective search space used: 2351065799
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)