Os04g0405500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0405500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 576.53 | 1.13 | 6.31 | -0.572 | 5.32 | -2.84 | 1.56 | 3.53 | -0.492 | 8.32 | 11.53 | 15 | 21.7 | -- |
| 597.24 | 1.14 | 6.3 | -0.635 | 5.33 | -2.84 | 1.95 | -- | -0.478 | 8.29 | 11.5 | 16 | 21.6 | -- |
| 582.82 | 1.12 | 6.31 | -0.526 | 5.33 | -2.84 | -- | 3.98 | -0.504 | 8.36 | 12.1 | 16 | 21.6 | -- |
| 607.82 | 1.15 | 6.32 | -0.634 | 5.24 | -2.66 | -- | -- | -0.498 | 8.57 | 11.35 | 14 | 21 | -- |
| 796.68 | 1.32 | 6.46 | -0.748 | -- | -4.27 | -- | -0.604 | -0.469 | -- | 18.27 | 6 | 9.21 | -- |
| 714.95 | 1.25 | 6.32 | -0.708 | 4.78 | -- | 0.968 | -- | -0.421 | 9.54 | -- | -- | -- | -- |
| 718.39 | 1.26 | 6.32 | -0.671 | 4.77 | -- | -- | -- | -0.419 | 9.56 | -- | -- | -- | -- |
| 712.58 | 1.24 | 6.46 | -0.664 | -- | -4.69 | -- | -- | -0.45 | -- | 119.4 | 8 | 8.72 | -- |
| 618.17 | 1.16 | 6.29 | -- | 5.18 | -2.56 | -- | -- | -0.358 | 8.62 | 10.73 | 14 | 20.9 | -- |
| 2063.72 | 2.12 | 6.45 | -0.706 | -- | -- | -- | -- | -0.408 | -- | -- | -- | -- | -- |
| 730.25 | 1.26 | 6.3 | -- | 4.78 | -- | -- | -- | -0.344 | 9.57 | -- | -- | -- | -- |
| 724.83 | 1.25 | 6.44 | -- | -- | -4.7 | -- | -- | -0.374 | -- | 123.5 | 6 | 8.67 | -- |
| 2076.88 | 2.13 | 6.43 | -- | -- | -- | -- | -- | -0.329 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 572.58 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 12 |
| 5 | 576.62 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 10 |
| 6 | 577.30 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 7 |
| 13 | 579.05 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 20 |
| 15 | 579.40 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 8 |
| 34 | 581.93 | radiation | 10 | 10 | < th | dose dependent | sin | 3 | NA |
| 35 | 581.97 | radiation | 10 | 10 | < th | dose dependent | rect. | 1 | 16 |
| 61 | 586.01 | temperature | 20 | 720 | > th | dose independent | sin | 15 | NA |
| 136 | 591.18 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 145 | 591.51 | wind | 1 | 14400 | > th | dose dependent | rect. | 21 | 9 |
| 169 | 592.28 | wind | 9 | 14400 | < th | dose independent | rect. | 8 | 3 |
| 189 | 593.21 | wind | 3 | 14400 | < th | dose dependent | sin | 10 | NA |
| 199 | 593.49 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 17 |
| 206 | 593.93 | wind | 9 | 14400 | < th | dose dependent | rect. | 22 | 14 |
| 208 | 593.97 | wind | 1 | 14400 | > th | dose dependent | rect. | 22 | 14 |
| 241 | 594.73 | wind | 1 | 14400 | > th | dose dependent | rect. | 22 | 12 |
| 287 | 595.40 | temperature | 20 | 270 | > th | dose independent | sin | 10 | NA |
| 311 | 595.81 | wind | 1 | 14400 | > th | dose dependent | sin | 9 | NA |
| 325 | 596.11 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 21 |
| 373 | 597.05 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 389 | 597.35 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 395 | 597.44 | humidity | 80 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 400 | 597.51 | radiation | 20 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 499 | 599.22 | radiation | 10 | 10 | < th | dose dependent | rect. | 1 | 13 |
| 542 | 599.91 | wind | 3 | 14400 | < th | dose independent | rect. | 22 | 15 |
| 571 | 600.29 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 587 | 600.48 | wind | 3 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 596 | 600.55 | wind | 3 | 14400 | > th | dose independent | rect. | 22 | 14 |
| 606 | 600.71 | wind | 1 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 650 | 601.24 | wind | 1 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 658 | 601.34 | wind | 3 | 14400 | < th | dose independent | sin | 9 | NA |
| 659 | 601.34 | humidity | 80 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 672 | 601.56 | wind | 3 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 698 | 601.79 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 705 | 601.82 | radiation | 1 | 30 | > th | dose independent | rect. | 5 | 10 |
| 734 | 602.14 | radiation | 1 | 30 | > th | dose independent | sin | 2 | NA |
| 740 | 602.20 | wind | 3 | 14400 | > th | dose independent | sin | 9 | NA |
| 746 | 602.31 | wind | 1 | 14400 | > th | dose independent | rect. | 20 | 10 |
| 766 | 602.45 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 7 |
| 791 | 602.69 | wind | 9 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 817 | 602.97 | wind | 3 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 858 | 603.32 | wind | 3 | 43200 | < th | dose dependent | rect. | 4 | 9 |
| 886 | 603.61 | wind | 3 | 14400 | > th | dose independent | rect. | 19 | 14 |
| 892 | 603.71 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 7 |
| 898 | 603.79 | radiation | 10 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 912 | 603.90 | radiation | 10 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 920 | 603.98 | radiation | 10 | 10 | < th | dose dependent | no | NA | NA |
| 928 | 604.07 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 931 | 604.08 | radiation | 10 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 954 | 604.28 | wind | 3 | 43200 | < th | dose independent | rect. | 5 | 8 |