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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0526700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.62 (0.0505) R2 : 0.754
β1 : 0.762 (0.296) R2dD : 0.0167 R2D : -0.087
β2 : 3.18 (0.0956) R2dC : 0.607 R2C : 0.605
β3 : -0.524 (0.161) R2dE : 0.00922 R2E : -0.00685
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 9.25 (1.03) R2dD*E : 0.198 R2D*E : 0.109
γ1 : -0.301 (0.103) R2dN8 : 0.0099 R2N8 : -0.00772
σ : 0.713
deviance : 234.28
__
_____
C
peak time of C : 8.78
E
wheather : temperature
threshold : 26.9
memory length : 4054
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
234.2 0.719 5.61 0.764 3.18 -0.521 -0.172 9.2 -0.301 8.78 26.9 4078 -- --
265.51 0.759 5.91 -0.545 3.22 -0.876 -1.02 -- -0.643 8.73 16.3 24385 -- --
234.28 0.713 5.62 0.762 3.18 -0.524 -- 9.25 -0.301 8.78 26.9 4054 -- --
260.87 0.752 5.87 -0.421 3.29 -1.19 -- -- -0.597 8.71 15.37 29003 -- --
791.15 1.31 5.59 1.69 -- -0.946 -- 9.83 0.0316 -- 26.9 2897 -- --
277.77 0.781 5.91 -1.45 3.21 -- -0.394 -- -0.839 8.74 -- -- -- --
278.29 0.781 5.91 -1.46 3.21 -- -- -- -0.839 8.74 -- -- -- --
842.16 1.35 5.92 -0.357 -- -1.23 -- -- -0.502 -- 14.19 46971 -- --
263.35 0.756 5.82 -- 3.21 -1.46 -- -- -0.462 8.73 14.3 47520 -- --
863.53 1.37 5.99 -1.46 -- -- -- -- -0.813 -- -- -- -- --
334.69 0.856 5.87 -- 3.21 -- -- -- -0.676 8.77 -- -- -- --
845.03 1.35 5.91 -- -- -1.5 -- -- -0.434 -- 14.2 47520 -- --
919.56 1.42 5.96 -- -- -- -- -- -0.651 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 218.58 wind 1.0 43200 < th dose independent rect. 2 3
2 219.09 wind 1.0 43200 > th dose independent rect. 2 3
3 221.01 humidity 90.0 14400 > th dose independent rect. 23 8
4 221.69 wind 1.0 43200 > th dose independent rect. 2 1
5 221.80 wind 1.0 43200 < th dose independent rect. 2 1
9 222.52 humidity 90.0 14400 > th dose dependent rect. 4 3
12 222.88 humidity 90.0 14400 > th dose dependent rect. 5 1
25 224.86 radiation 20.0 10 < th dose dependent rect. 1 17
26 225.06 humidity 90.0 14400 < th dose independent rect. 24 7
33 225.97 wind 1.0 43200 > th dose independent rect. 4 2
36 226.46 humidity 90.0 14400 > th dose dependent rect. 23 8
38 226.54 wind 1.0 43200 < th dose independent rect. 4 1
45 227.17 humidity 90.0 14400 < th dose independent rect. 24 1
49 227.42 radiation 20.0 10 < th dose dependent rect. 1 15
51 227.57 wind 1.0 43200 > th dose independent rect. 10 1
55 227.72 humidity 90.0 14400 < th dose independent rect. 22 6
58 227.78 humidity 90.0 14400 > th dose dependent rect. 23 3
59 227.85 radiation 20.0 10 < th dose dependent rect. 1 13
82 228.72 wind 1.0 43200 < th dose independent rect. 10 1
90 228.96 wind 3.0 43200 > th dose independent rect. 13 1
94 229.00 radiation 1.0 14400 > th dose independent rect. 18 1
104 229.00 radiation 10.0 43200 < th dose dependent rect. 13 1
114 229.45 wind 1.0 43200 < th dose dependent rect. 2 3
118 229.80 radiation 20.0 10 < th dose independent rect. 1 17
127 230.16 wind 3.0 43200 < th dose independent rect. 13 1
151 230.84 wind 1.0 43200 < th dose dependent rect. 4 1
156 230.94 wind 1.0 43200 < th dose dependent rect. 2 6
158 230.95 radiation 1.0 43200 < th dose dependent rect. 4 1
163 231.12 radiation 20.0 1440 < th dose independent rect. 11 1
169 231.29 radiation 1.0 43200 < th dose dependent rect. 20 9
175 231.37 radiation 1.0 43200 < th dose dependent rect. 24 5
187 231.54 wind 1.0 43200 < th dose dependent rect. 2 1
191 231.63 temperature 20.0 43200 > th dose independent rect. 4 1
194 231.69 wind 1.0 43200 < th dose dependent rect. 10 1
199 231.73 radiation 10.0 43200 > th dose independent rect. 10 1
201 231.78 radiation 10.0 43200 > th dose independent rect. 8 3
203 231.80 radiation 20.0 10 < th dose dependent rect. 1 10
205 231.85 temperature 20.0 43200 < th dose independent rect. 4 1
210 231.90 radiation 20.0 10 < th dose dependent sin 3 NA
225 232.19 radiation 1.0 14400 < th dose independent rect. 18 8
228 232.26 radiation 20.0 14400 > th dose dependent rect. 7 1
239 232.40 radiation 1.0 14400 < th dose independent rect. 18 4
257 232.48 wind 9.0 43200 > th dose dependent rect. 18 1
258 232.51 radiation 1.0 14400 < th dose independent rect. 18 1
279 232.82 wind 5.0 43200 < th dose independent rect. 8 1
289 232.98 radiation 10.0 43200 < th dose independent rect. 13 1
294 233.01 radiation 1.0 4320 < th dose dependent rect. 18 11
300 233.08 radiation 10.0 43200 > th dose independent rect. 13 1
309 233.11 wind 1.0 43200 < th dose dependent rect. 21 1
310 233.15 temperature 25.0 43200 > th dose independent rect. 9 2
312 233.16 precipitation 0.1 43200 < th dose independent rect. 7 8
313 233.16 precipitation 0.1 43200 < th dose dependent rect. 7 8
314 233.17 precipitation 0.1 43200 < th dose independent rect. 6 10
315 233.17 precipitation 0.1 43200 < th dose dependent rect. 6 10
321 233.20 humidity 90.0 14400 > th dose dependent sin 9 NA
335 233.28 precipitation 0.1 43200 > th dose independent rect. 6 10
336 233.28 temperature 20.0 43200 > th dose dependent rect. 10 1
337 233.28 precipitation 0.1 43200 > th dose dependent rect. 6 9
340 233.29 precipitation 0.1 43200 > th dose independent rect. 7 8
355 233.39 wind 5.0 43200 > th dose independent rect. 8 1
362 233.44 radiation 1.0 4320 < th dose dependent rect. 18 8
364 233.45 radiation 10.0 43200 > th dose independent rect. 5 9
378 233.46 temperature 15.0 43200 > th dose dependent rect. 4 1
382 233.48 radiation 10.0 43200 > th dose independent rect. 8 6
386 233.50 temperature 20.0 43200 > th dose independent rect. 24 1
389 233.52 temperature 25.0 43200 < th dose independent rect. 9 2
401 233.57 wind 9.0 43200 < th dose independent rect. 18 1
415 233.63 temperature 25.0 43200 < th dose independent rect. 9 4
417 233.64 temperature 30.0 43200 < th dose dependent rect. 10 1
430 233.70 precipitation 0.1 43200 < th dose independent rect. 9 6
433 233.70 precipitation 0.1 43200 < th dose dependent rect. 9 6
445 233.74 temperature 20.0 43200 < th dose independent rect. 24 1
453 233.77 precipitation 0.1 43200 < th dose independent rect. 11 4
456 233.77 precipitation 0.1 43200 < th dose dependent rect. 11 4
486 233.85 humidity 70.0 43200 > th dose independent rect. 19 1
562 234.01 temperature 15.0 43200 > th dose dependent rect. 2 11
563 234.01 temperature 15.0 43200 > th dose dependent rect. 24 13
569 234.03 precipitation 0.1 43200 > th dose independent rect. 9 6
659 234.20 temperature 15.0 43200 > th dose dependent sin 6 NA
701 234.25 radiation 1.0 4320 < th dose dependent rect. 20 9
740 234.31 humidity 90.0 14400 > th dose independent rect. 5 1
741 234.31 humidity 70.0 43200 > th dose independent rect. 10 1
787 234.37 precipitation 0.1 43200 > th dose independent rect. 11 4
797 234.39 radiation 10.0 43200 > th dose independent sin 6 NA
880 234.48 temperature 15.0 43200 > th dose dependent rect. 21 1