BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0526700 Os02g0526700|015-092-G02
         (445 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0526700  Conserved hypothetical protein                      507   e-144
Os04g0405500  Conserved hypothetical protein                      143   2e-34

>Os02g0526700 Conserved hypothetical protein
          Length = 445

 Score =  507 bits (1306), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 279/425 (65%), Positives = 279/425 (65%)

Query: 1   MGEKVSEAAAGVEDQDGGVAAAGMDGIQYCSEHPYRPXXXXXXXXXXXICAFCLQEKLGR 60
           MGEKVSEAAAGVEDQDGGVAAAGMDGIQYCSEHPYRP           ICAFCLQEKLGR
Sbjct: 1   MGEKVSEAAAGVEDQDGGVAAAGMDGIQYCSEHPYRPGAAAAAVAGGGICAFCLQEKLGR 60

Query: 61  LVSSSKSSPFFPLGGHXXXXXXXXXXXXFRRXXXXXXXXXXXLRSSSGASRKLIPFGRRK 120
           LVSSSKSSPFFPLGGH            FRR           LRSSSGASRKLIPFGRRK
Sbjct: 61  LVSSSKSSPFFPLGGHPPPSASPSSPPSFRRAAAVVAEPPPPLRSSSGASRKLIPFGRRK 120

Query: 121 XXXXXXXXXXXXXVALAGGGLKRSKSVAPRPEEHYXXXXXXVTAESPRKKSFWSFLYLSS 180
                        VALAGGGLKRSKSVAPRPEEHY      VTAESPRKKSFWSFLYLSS
Sbjct: 121 ASSSSSSSSSSASVALAGGGLKRSKSVAPRPEEHYSSSASSVTAESPRKKSFWSFLYLSS 180

Query: 181 SPYTHQAVTSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHEQQQPRAAATSSVS 240
           SPYTHQAVTST                                  HEQQQPRAAATSSVS
Sbjct: 181 SPYTHQAVTSTSYGANGGAAAAARRKSVSVASAAWASRGGSAAGAHEQQQPRAAATSSVS 240

Query: 241 GRRLEAIGEPEXXXXXXXXXXFGRKVARSRSVGCGSRSFSGDFLERISNGFGDCTLRRVE 300
           GRRLEAIGEPE          FGRKVARSRSVGCGSRSFSGDFLERISNGFGDCTLRRVE
Sbjct: 241 GRRLEAIGEPESPSQVSSSSSFGRKVARSRSVGCGSRSFSGDFLERISNGFGDCTLRRVE 300

Query: 301 SQREPKPNKMRALGHLXXXXXXXXXXXXXXXXVYQHQHRIKCAGFFGGMGPTPSYWLSXX 360
           SQREPKPNKMRALGHL                VYQHQHRIKCAGFFGGMGPTPSYWLS  
Sbjct: 301 SQREPKPNKMRALGHLGGGGGGGADDDDDDDDVYQHQHRIKCAGFFGGMGPTPSYWLSAA 360

Query: 361 XXXXXXXXXXXXXXXXXXSHRSWAWTALASPMRALRPXXXXXXXXXXXXXAVHSSHVVAH 420
                             SHRSWAWTALASPMRALRP             AVHSSHVVAH
Sbjct: 361 EGAATAGGVGGARKLGGRSHRSWAWTALASPMRALRPTSSTTTTTTKTITAVHSSHVVAH 420

Query: 421 SNGST 425
           SNGST
Sbjct: 421 SNGST 425



>Os04g0405500 Conserved hypothetical protein
          Length = 299

 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/166 (56%), Positives = 97/166 (58%), Gaps = 13/166 (7%)

Query: 241 GRRLEAIGEPEX---XXXXXXXXXFGRKVARSRSVGCGSRSFSGDFLERISNGFGDCTLR 297
           GRRLEAI EP+             FGRKVARSRSVGCGSRSFSGDFLER+S GFGDC LR
Sbjct: 105 GRRLEAIVEPDSPGRRSEGSSSSSFGRKVARSRSVGCGSRSFSGDFLERLSTGFGDCALR 164

Query: 298 RVESQREPKP-NKMRALGHLXXXXXXXXXXXXXXXXVYQHQHRIKCAGFFGGMGPTP--- 353
           RVES REPKP +   AL HL                  Q QHRIKCAGFFGG+G  P   
Sbjct: 165 RVESHREPKPKSSAGALAHLGGNHSAAGNGDDDEYESTQ-QHRIKCAGFFGGLGAAPPPT 223

Query: 354 --SYWLSXXXXXXXXXXXXXXXXXXXXSHRSWAWTALASPMRALRP 397
             SYWLS                    SHRSWAW ALASPMRALRP
Sbjct: 224 SSSYWLS--AADGATAAAPSARTHGARSHRSWAW-ALASPMRALRP 266



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.131    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,383,674
Number of extensions: 304206
Number of successful extensions: 555
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 548
Number of HSP's successfully gapped: 2
Length of query: 445
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 341
Effective length of database: 11,605,545
Effective search space: 3957490845
Effective search space used: 3957490845
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)