BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0403500 Os04g0403500|AK058428
(312 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0403500 NAD-dependent epimerase/dehydratase family pro... 496 e-141
Os02g0556100 NAD-dependent epimerase/dehydratase family pro... 176 2e-44
>Os04g0403500 NAD-dependent epimerase/dehydratase family protein
Length = 312
Score = 496 bits (1278), Expect = e-141, Method: Compositional matrix adjust.
Identities = 249/266 (93%), Positives = 249/266 (93%)
Query: 47 PFSRLVTKRNFAASDIREDYSTPIDVVADVKTEKIVVLGGSGFVGSAICKAAVSKGIEVV 106
PFSRLVTKRNFAASDIREDYSTPIDVVADVKTEKIVVLGGSGFVGSAICKAAVSKGIEVV
Sbjct: 47 PFSRLVTKRNFAASDIREDYSTPIDVVADVKTEKIVVLGGSGFVGSAICKAAVSKGIEVV 106
Query: 107 SLSRSGRPSYSDPWVDQVTWLAGDVFYARWDEVLVGATAVVSTLGGFGNEEQMKRINGEA 166
SLSRSGRPSYSDPWVDQVTWLAGDVFYARWDEVLVGATAVVSTLGGFGNEEQMKRINGEA
Sbjct: 107 SLSRSGRPSYSDPWVDQVTWLAGDVFYARWDEVLVGATAVVSTLGGFGNEEQMKRINGEA 166
Query: 167 NVTAVDAAKEFGIPKFILISVHDYNLPSFLLNSGYFTGKRKAESEVLSKYPTSGVVLRPG 226
NVTAVDAAKEFGIPKFILISVHDYNLPSFLLNSGYFTGKRKAESEVLSKYPTSGVVLRPG
Sbjct: 167 NVTAVDAAKEFGIPKFILISVHDYNLPSFLLNSGYFTGKRKAESEVLSKYPTSGVVLRPG 226
Query: 227 FIYGKRKVDGFEIPLDVVGQPLEKLLSSVENFTKXXXXXXXXXXXXXXXXXVDDVAYAVI 286
FIYGKRKVDGFEIPLDVVGQPLEKLLSSVENFTK VDDVAYAVI
Sbjct: 227 FIYGKRKVDGFEIPLDVVGQPLEKLLSSVENFTKPLSSLPASDLLLAPPVSVDDVAYAVI 286
Query: 287 NGVIDDSFFGVFTIEQIKEAAAKVRV 312
NGVIDDSFFGVFTIEQIKEAAAKVRV
Sbjct: 287 NGVIDDSFFGVFTIEQIKEAAAKVRV 312
>Os02g0556100 NAD-dependent epimerase/dehydratase family protein
Length = 292
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 84/183 (45%), Positives = 125/183 (68%), Gaps = 2/183 (1%)
Query: 79 EKIVVLGGSGFVGSAICKAAVSKGIEVVSLSRSGRPSYSDPWVDQVTWLAGDVFYA-RWD 137
+K++VLGG+GFVGS +CK A+ KG V SL+RSG+PS S+ W D+V W G++
Sbjct: 64 DKLLVLGGNGFVGSHVCKEALDKGFTVASLNRSGKPSISESWADKVIWNKGNLLEPDSLK 123
Query: 138 EVLVGATAVVSTLGGFGNEEQMKRINGEANVTAVDAAKEFGIPKFILISVHDYNLPSFLL 197
+++ G +AVVS +GGFG+ M +ING AN+ A+ A E GI +F+ +S D+ ++LL
Sbjct: 124 DIMEGVSAVVSCVGGFGSNSYMYKINGTANINAISVAAEKGIKRFVYVSAADFGFVNYLL 183
Query: 198 NSGYFTGKRKAESEVLSKYPTSGVVLRPGFIYGKRKVDGFEIPLDVVGQPLEKLLSSVEN 257
GY+ GKR E+E+LSK+ GV+LRPGFI+G R+V +IPL +VG P++ +L S +
Sbjct: 184 Q-GYYEGKRATEAELLSKFTYGGVILRPGFIHGTRRVGSVKIPLGLVGSPMQMVLQSAKP 242
Query: 258 FTK 260
T+
Sbjct: 243 LTR 245
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.137 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,013,618
Number of extensions: 317591
Number of successful extensions: 880
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 877
Number of HSP's successfully gapped: 2
Length of query: 312
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 211
Effective length of database: 11,762,187
Effective search space: 2481821457
Effective search space used: 2481821457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)