Os04g0403500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NAD-dependent epimerase/dehydratase family protein.
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Os04g0403500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NAD-dependent epimerase/dehydratase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 110.17 | 0.493 | 12.6 | -1.34 | 4.51 | 1.86 | 1.53 | 0.963 | -0.611 | 8.81 | 20.88 | 1514 | -- | -- |
| 110.8 | 0.49 | 12.6 | -1.27 | 4.49 | 1.65 | 1.45 | -- | -0.609 | 8.81 | 20.91 | 1543 | -- | -- |
| 117.92 | 0.506 | 12.6 | -1.26 | 4.51 | 1.92 | -- | 0.835 | -0.603 | 8.8 | 20.8 | 1543 | -- | -- |
| 118.29 | 0.507 | 12.5 | -1.2 | 4.51 | 1.68 | -- | -- | -0.588 | 8.8 | 20.9 | 1560 | -- | -- |
| 989.65 | 1.47 | 12.6 | -0.684 | -- | 4.36 | -- | 0.521 | -0.113 | -- | 66.83 | 644 | -- | -- |
| 128.41 | 0.531 | 12.6 | -1.68 | 4.5 | -- | 1.67 | -- | -0.775 | 8.82 | -- | -- | -- | -- |
| 137.79 | 0.55 | 12.6 | -1.62 | 4.5 | -- | -- | -- | -0.775 | 8.81 | -- | -- | -- | -- |
| 989.84 | 1.47 | 12.6 | -0.566 | -- | 4.38 | -- | -- | -0.09 | -- | 82.3 | 640 | -- | -- |
| 137.68 | 0.546 | 12.5 | -- | 4.48 | 1.42 | -- | -- | -0.31 | 8.8 | 19.84 | 47520 | -- | -- |
| 1286.96 | 1.68 | 12.7 | -1.62 | -- | -- | -- | -- | -0.741 | -- | -- | -- | -- | -- |
| 207.05 | 0.673 | 12.5 | -- | 4.49 | -- | -- | -- | -0.594 | 8.84 | -- | -- | -- | -- |
| 997.51 | 1.47 | 12.5 | -- | -- | 4.59 | -- | -- | -0.00131 | -- | 69.99 | 644 | -- | -- |
| 1355.96 | 1.72 | 12.7 | -- | -- | -- | -- | -- | -0.561 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 105.31 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 8 |
| 4 | 105.77 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 4 |
| 7 | 106.00 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 12 |
| 11 | 106.26 | temperature | 20 | 30 | > th | dose independent | rect. | 16 | 12 |
| 16 | 106.58 | temperature | 25 | 720 | < th | dose dependent | rect. | 12 | 1 |
| 20 | 106.72 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 12 |
| 31 | 107.28 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 14 |
| 42 | 107.59 | temperature | 25 | 10 | < th | dose dependent | sin | 16 | NA |
| 50 | 107.73 | temperature | 25 | 90 | < th | dose dependent | sin | 17 | NA |
| 63 | 107.92 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 5 |
| 67 | 108.00 | temperature | 20 | 90 | < th | dose independent | rect. | 13 | 14 |
| 70 | 108.06 | temperature | 25 | 270 | < th | dose dependent | sin | 19 | NA |
| 77 | 108.12 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 12 |
| 82 | 108.17 | temperature | 20 | 90 | < th | dose independent | sin | 16 | NA |
| 86 | 108.21 | temperature | 20 | 90 | > th | dose independent | sin | 16 | NA |
| 168 | 109.20 | temperature | 20 | 1440 | < th | dose dependent | rect. | 1 | 3 |
| 198 | 109.45 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 9 |
| 206 | 109.50 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 222 | 109.59 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 18 |
| 230 | 109.67 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 18 |
| 253 | 109.75 | temperature | 20 | 1440 | < th | dose dependent | rect. | 12 | 18 |
| 266 | 109.82 | temperature | 20 | 30 | > th | dose independent | rect. | 18 | 10 |
| 279 | 109.85 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 287 | 109.88 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 1 |
| 363 | 110.20 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 16 |
| 368 | 110.22 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 5 |
| 377 | 110.25 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 385 | 110.28 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 19 |
| 393 | 110.30 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 16 |
| 398 | 110.31 | temperature | 20 | 1440 | < th | dose dependent | rect. | 24 | 19 |
| 406 | 110.34 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 19 |
| 408 | 110.34 | temperature | 20 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 424 | 110.37 | temperature | 20 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 453 | 110.44 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 454 | 110.44 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 527 | 110.56 | temperature | 25 | 720 | < th | dose dependent | sin | 22 | NA |
| 574 | 110.63 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 585 | 110.64 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 602 | 110.66 | temperature | 20 | 720 | > th | dose independent | rect. | 11 | 8 |
| 636 | 110.71 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 1 |
| 690 | 110.81 | temperature | 20 | 1440 | < th | dose dependent | sin | 13 | NA |
| 701 | 110.83 | temperature | 20 | 1440 | < th | dose independent | sin | 4 | NA |
| 703 | 110.83 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 1 |
| 715 | 110.84 | temperature | 20 | 1440 | > th | dose independent | sin | 4 | NA |
| 850 | 111.05 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 890 | 111.13 | humidity | 90 | 720 | > th | dose independent | rect. | 16 | 1 |
| 928 | 111.20 | temperature | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 932 | 111.21 | temperature | 20 | 1440 | < th | dose independent | sin | 14 | NA |
| 933 | 111.21 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 941 | 111.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 2 |
| 969 | 111.25 | temperature | 20 | 1440 | > th | dose independent | sin | 14 | NA |