Os02g0556100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NAD-dependent epimerase/dehydratase family protein.
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Os02g0556100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NAD-dependent epimerase/dehydratase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.35 | 0.227 | 11.6 | -0.612 | 0.405 | 0.888 | 0.391 | 0.0842 | -0.36 | 8.53 | 79.64 | 1355 | -- | -- |
| 23.08 | 0.224 | 11.6 | -0.635 | 0.418 | 0.877 | 0.381 | -- | -0.361 | 8.41 | 79 | 1326 | -- | -- |
| 23.49 | 0.226 | 11.6 | -0.61 | 0.386 | 0.894 | -- | 0.101 | -0.337 | 8.49 | 78.93 | 1355 | -- | -- |
| 23.45 | 0.226 | 11.6 | -0.62 | 0.407 | 0.911 | -- | -- | -0.349 | 8.48 | 78.84 | 1351 | -- | -- |
| 32.29 | 0.265 | 11.7 | -0.602 | -- | 0.957 | -- | 0.11 | -0.346 | -- | 78.66 | 1383 | -- | -- |
| 33.25 | 0.27 | 11.6 | -0.589 | 0.423 | -- | 0.388 | -- | -0.308 | 7.95 | -- | -- | -- | -- |
| 33.7 | 0.272 | 11.6 | -0.578 | 0.423 | -- | -- | -- | -0.309 | 7.91 | -- | -- | -- | -- |
| 32.27 | 0.265 | 11.7 | -0.62 | -- | 0.954 | -- | -- | -0.348 | -- | 78.5 | 1388 | -- | -- |
| 33.5 | 0.27 | 11.6 | -- | 0.41 | 0.91 | -- | -- | -0.294 | 8.38 | 80.13 | 1371 | -- | -- |
| 43.44 | 0.308 | 11.6 | -0.574 | -- | -- | -- | -- | -0.303 | -- | -- | -- | -- | -- |
| 42.51 | 0.305 | 11.6 | -- | 0.419 | -- | -- | -- | -0.244 | 8.01 | -- | -- | -- | -- |
| 42.02 | 0.302 | 11.6 | -- | -- | 0.888 | -- | -- | -0.287 | -- | 80 | 1403 | -- | -- |
| 52.12 | 0.337 | 11.6 | -- | -- | -- | -- | -- | -0.239 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.65 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 10 | 21.79 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 13 | 21.82 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 10 |
| 28 | 21.96 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 104 | 22.43 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 149 | 22.72 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 6 |
| 153 | 22.75 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 155 | 22.76 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 202 | 23.06 | humidity | 70 | 1440 | > th | dose dependent | sin | 1 | NA |
| 289 | 23.41 | humidity | 70 | 720 | > th | dose dependent | rect. | 7 | 20 |
| 415 | 23.69 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 418 | 23.69 | humidity | 80 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 489 | 23.83 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 539 | 23.90 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 540 | 23.90 | humidity | 70 | 720 | > th | dose dependent | sin | 19 | NA |
| 548 | 23.91 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 607 | 23.99 | humidity | 70 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 617 | 24.00 | humidity | 70 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 628 | 24.02 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 641 | 24.03 | humidity | 70 | 720 | > th | dose dependent | no | NA | NA |
| 649 | 24.04 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 675 | 24.06 | humidity | 60 | 1440 | > th | dose dependent | rect. | 18 | 22 |
| 727 | 24.11 | humidity | 70 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 777 | 24.15 | humidity | 90 | 1440 | < th | dose dependent | rect. | 1 | 14 |
| 969 | 24.28 | humidity | 90 | 1440 | < th | dose dependent | rect. | 20 | 19 |