BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0556100 Os02g0556100|AK103125
(292 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G10730.1 | chr5:3390822-3392947 REVERSE LENGTH=288 333 9e-92
AT5G15910.1 | chr5:5193207-5195202 FORWARD LENGTH=270 247 6e-66
AT1G32220.1 | chr1:11608038-11609591 FORWARD LENGTH=297 171 3e-43
AT5G18660.1 | chr5:6220872-6222125 REVERSE LENGTH=418 48 8e-06
>AT5G10730.1 | chr5:3390822-3392947 REVERSE LENGTH=288
Length = 287
Score = 333 bits (853), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 168/252 (66%), Positives = 197/252 (78%)
Query: 41 SKRVEEPFKVEEAETVKVPPPSPDKLLVLGGNGFVGSHVCKEALDKGFTVASLNRSGKPS 100
S +++EPF VEEAETV VPPP +KLLVLGGNGFVGSHVCKEALD+G +V+SL+RSG+ S
Sbjct: 34 SNKIDEPFNVEEAETVHVPPPPTEKLLVLGGNGFVGSHVCKEALDRGLSVSSLSRSGRSS 93
Query: 101 ISESWADKVIWNKGNLLEPDSLKDIMEGVSAVVSCVGGFGSNSYMYKINGTANINAISVA 160
+ ESWA +V W++GNLL D LKD +EGV++V+SCVGGFGSNSYMYKINGTANINAI A
Sbjct: 94 LQESWASRVTWHQGNLLSSDLLKDALEGVTSVISCVGGFGSNSYMYKINGTANINAIRAA 153
Query: 161 AEKGIKRFVYVSAADFGFVNYLLQGYYEGKRATEAELLSKFTYGGVILRPGFIHGTRRVG 220
+EKG+KRFVY+SAADFG NYLL+GYYEGKRA E ELL++F YGG+ILRPGFI+GTR VG
Sbjct: 154 SEKGVKRFVYISAADFGLANYLLRGYYEGKRAAETELLTRFAYGGIILRPGFIYGTRSVG 213
Query: 221 SVKIPLGLVGSPMQMVLQSAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDPVFPPGIV 280
S+KIPLG+ GSPM+MVLQ AK TDPVFPPGIV
Sbjct: 214 SMKIPLGVFGSPMEMVLQQAKPLNQLPLVGPLFTPPVNVESVAKVAVRAATDPVFPPGIV 273
Query: 281 DVYGIMRYSDQK 292
DV+GI RYS QK
Sbjct: 274 DVHGIQRYSQQK 285
>AT5G15910.1 | chr5:5193207-5195202 FORWARD LENGTH=270
Length = 269
Score = 247 bits (630), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 125/226 (55%), Positives = 168/226 (74%), Gaps = 1/226 (0%)
Query: 64 DKLLVLGGNGFVGSHVCKEALDKGFTVASLNRSGKPSISESWADKVIWNKGNLLEPDSLK 123
+K+LVLGGNG+VGSH+CKEAL +GF+V+SL+RSG+ S+ +SW D V W++G+LL PDSLK
Sbjct: 42 NKILVLGGNGYVGSHICKEALRQGFSVSSLSRSGRSSLHDSWVDDVTWHQGDLLSPDSLK 101
Query: 124 DIMEGVSAVVSCVGGFGSNSYMYKINGTANINAISVAAEKGIKRFVYVSAADFGFVNYLL 183
+EG+++V+SCVGGFGSNS M +INGTANINA+ AAE+G+KRFVY+SAADFG +N L+
Sbjct: 102 PALEGITSVISCVGGFGSNSQMVRINGTANINAVKAAAEQGVKRFVYISAADFGVINNLI 161
Query: 184 QGYYEGKRATEAELLSKFTYGGVILRPGFIHGTRRVGSVKIPLGLVGSPMQMVLQSA-KX 242
+GY+EGKRATEAE+L KF G +LRPGFIHGTR+VGS+K+PL L+G+P++MVL+ K
Sbjct: 162 RGYFEGKRATEAEILDKFGNRGSVLRPGFIHGTRQVGSIKLPLSLIGAPLEMVLKLLPKE 221
Query: 243 XXXXXXXXXXXXXXXXXXXXXXXXXXXXTDPVFPPGIVDVYGIMRY 288
DP F G++DVY I+++
Sbjct: 222 VTKIPVIGPLLIPPVNVKSVAATAVKAAVDPEFASGVIDVYRILQH 267
>AT1G32220.1 | chr1:11608038-11609591 FORWARD LENGTH=297
Length = 296
Score = 171 bits (434), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 79/179 (44%), Positives = 123/179 (68%), Gaps = 2/179 (1%)
Query: 64 DKLLVLGGNGFVGSHVCKEALDKGFTVASLNRSGKPSISESWADKVIWNKGNLLEPDSLK 123
++++VLGGNGFVGS +CK A+ G V S++RSG+P+ +SW D+V W G++ +
Sbjct: 63 ERVVVLGGNGFVGSAICKAAISNGIEVVSVSRSGRPNFEDSWLDQVTWVTGDVFYLN-WD 121
Query: 124 DIMEGVSAVVSCVGGFGSNSYMYKINGTANINAISVAAEKGIKRFVYVSAADFGFVNYLL 183
+++ G +AVVS +GGFG+ M +ING AN+ A++ A + G+ +FV ++ D+ ++L
Sbjct: 122 EVLLGATAVVSTIGGFGNEEQMKRINGEANVTAVNAAKDFGVPKFVLITVHDYNLPPFIL 181
Query: 184 -QGYYEGKRATEAELLSKFTYGGVILRPGFIHGTRRVGSVKIPLGLVGSPMQMVLQSAK 241
GY+ GKR EAELLSK+ GV+LRPGFI+G R+V +++PL LVG P+ + SA+
Sbjct: 182 SNGYFTGKRNAEAELLSKYPTSGVVLRPGFIYGKRKVNGIEVPLDLVGEPLDKIYDSAE 240
>AT5G18660.1 | chr5:6220872-6222125 REVERSE LENGTH=418
Length = 417
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 75/169 (44%), Gaps = 24/169 (14%)
Query: 61 PSPDKLLVLGGNGFVGSHVCKEALDKGFTVASLNRS-----GKPSISESWADKVIWNK-- 113
P +LV+G G++G V KE + +GF V ++ R GK E+ N
Sbjct: 81 PKDINVLVVGSTGYIGRFVVKEMIKRGFNVIAVAREKSGIRGKNDKEETLKQLQGANVCF 140
Query: 114 GNLLEPDSLKDIME----GVSAVVSCVGGF-GSNSYMYKINGTANINAISVAAEKGIKRF 168
++ E D L+ +E GV VVSC+ G +KI+ A N++ + G K F
Sbjct: 141 SDVTELDVLEKSIENLGFGVDVVVSCLASRNGGIKDSWKIDYEATKNSLVAGKKFGAKHF 200
Query: 169 VYVSAADFGFVNYLLQGYYEGKRATEAELL-------SKFTYGGVILRP 210
V +SA V L + K EAEL+ S FTY I+RP
Sbjct: 201 VLLSAI---CVQKPLLEFQRAKLKFEAELMDLAEQQDSSFTYS--IVRP 244
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.135 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,263,956
Number of extensions: 205893
Number of successful extensions: 654
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 654
Number of HSP's successfully gapped: 4
Length of query: 292
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 194
Effective length of database: 8,419,801
Effective search space: 1633441394
Effective search space used: 1633441394
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)