BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0556100 Os02g0556100|AK103125
(292 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0556100 NAD-dependent epimerase/dehydratase family pro... 457 e-129
Os04g0403500 NAD-dependent epimerase/dehydratase family pro... 175 3e-44
>Os02g0556100 NAD-dependent epimerase/dehydratase family protein
Length = 292
Score = 457 bits (1176), Expect = e-129, Method: Compositional matrix adjust.
Identities = 234/292 (80%), Positives = 234/292 (80%)
Query: 1 MRSAMTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEDASKRVEEPFKVEEAETVKVPP 60
MRSAMTR SEDASKRVEEPFKVEEAETVKVPP
Sbjct: 1 MRSAMTRLIRSSSPVVSPSRLSAANLLKNNNGKAFLSEDASKRVEEPFKVEEAETVKVPP 60
Query: 61 PSPDKLLVLGGNGFVGSHVCKEALDKGFTVASLNRSGKPSISESWADKVIWNKGNLLEPD 120
PSPDKLLVLGGNGFVGSHVCKEALDKGFTVASLNRSGKPSISESWADKVIWNKGNLLEPD
Sbjct: 61 PSPDKLLVLGGNGFVGSHVCKEALDKGFTVASLNRSGKPSISESWADKVIWNKGNLLEPD 120
Query: 121 SLKDIMEGVSAVVSCVGGFGSNSYMYKINGTANINAISVAAEKGIKRFVYVSAADFGFVN 180
SLKDIMEGVSAVVSCVGGFGSNSYMYKINGTANINAISVAAEKGIKRFVYVSAADFGFVN
Sbjct: 121 SLKDIMEGVSAVVSCVGGFGSNSYMYKINGTANINAISVAAEKGIKRFVYVSAADFGFVN 180
Query: 181 YLLQGYYEGKRATEAELLSKFTYGGVILRPGFIHGTRRVGSVKIPLGLVGSPMQMVLQSA 240
YLLQGYYEGKRATEAELLSKFTYGGVILRPGFIHGTRRVGSVKIPLGLVGSPMQMVLQSA
Sbjct: 181 YLLQGYYEGKRATEAELLSKFTYGGVILRPGFIHGTRRVGSVKIPLGLVGSPMQMVLQSA 240
Query: 241 KXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDPVFPPGIVDVYGIMRYSDQK 292
K TDPVFPPGIVDVYGIMRYSDQK
Sbjct: 241 KPLTRLPLVGPLLTPPVSVASVAKVAVRAATDPVFPPGIVDVYGIMRYSDQK 292
>Os04g0403500 NAD-dependent epimerase/dehydratase family protein
Length = 312
Score = 175 bits (444), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 83/179 (46%), Positives = 123/179 (68%), Gaps = 2/179 (1%)
Query: 64 DKLLVLGGNGFVGSHVCKEALDKGFTVASLNRSGKPSISESWADKVIWNKGNLLEPDSLK 123
+K++VLGG+GFVGS +CK A+ KG V SL+RSG+PS S+ W D+V W G++
Sbjct: 79 EKIVVLGGSGFVGSAICKAAVSKGIEVVSLSRSGRPSYSDPWVDQVTWLAGDVFY-ARWD 137
Query: 124 DIMEGVSAVVSCVGGFGSNSYMYKINGTANINAISVAAEKGIKRFVYVSAADFGFVNYLL 183
+++ G +AVVS +GGFG+ M +ING AN+ A+ A E GI +F+ +S D+ ++LL
Sbjct: 138 EVLVGATAVVSTLGGFGNEEQMKRINGEANVTAVDAAKEFGIPKFILISVHDYNLPSFLL 197
Query: 184 Q-GYYEGKRATEAELLSKFTYGGVILRPGFIHGTRRVGSVKIPLGLVGSPMQMVLQSAK 241
GY+ GKR E+E+LSK+ GV+LRPGFI+G R+V +IPL +VG P++ +L S +
Sbjct: 198 NSGYFTGKRKAESEVLSKYPTSGVVLRPGFIYGKRKVDGFEIPLDVVGQPLEKLLSSVE 256
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.135 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,217,403
Number of extensions: 314040
Number of successful extensions: 983
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 980
Number of HSP's successfully gapped: 2
Length of query: 292
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 192
Effective length of database: 11,814,401
Effective search space: 2268364992
Effective search space used: 2268364992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)