BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0402200 Os04g0402200|J023045E17
         (79 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0402200  Similar to 110 kDa 4SNc-Tudor domain protein (...   165   8e-42
Os02g0523500  Similar to 110 kDa 4SNc-Tudor domain protein (...   136   4e-33

>Os04g0402200 Similar to 110 kDa 4SNc-Tudor domain protein (Fragment)
          Length = 79

 Score =  165 bits (417), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 79/79 (100%), Positives = 79/79 (100%)

Query: 1  QVPKKAKEFLHLLQRSRRHSAIVEYVFSGHRFKVTIPKETCTIAFALSGVRCPGRDEPYS 60
          QVPKKAKEFLHLLQRSRRHSAIVEYVFSGHRFKVTIPKETCTIAFALSGVRCPGRDEPYS
Sbjct: 1  QVPKKAKEFLHLLQRSRRHSAIVEYVFSGHRFKVTIPKETCTIAFALSGVRCPGRDEPYS 60

Query: 61 DEAITMMRRRILQRNVEVH 79
          DEAITMMRRRILQRNVEVH
Sbjct: 61 DEAITMMRRRILQRNVEVH 79



>Os02g0523500 Similar to 110 kDa 4SNc-Tudor domain protein (Fragment)
          Length = 986

 Score =  136 bits (342), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 60/75 (80%), Positives = 71/75 (94%)

Query: 4   KKAKEFLHLLQRSRRHSAIVEYVFSGHRFKVTIPKETCTIAFALSGVRCPGRDEPYSDEA 63
           KKA++FL  LQR+RRHSAIVEYVFSGHRFK+TIPKETC+IAF+ SGVRCPG+DEPYS+EA
Sbjct: 572 KKARDFLPFLQRNRRHSAIVEYVFSGHRFKLTIPKETCSIAFSFSGVRCPGKDEPYSNEA 631

Query: 64  ITMMRRRILQRNVEV 78
           I +MRRRILQR+VE+
Sbjct: 632 IALMRRRILQRDVEI 646



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.137    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,523,535
Number of extensions: 81429
Number of successful extensions: 201
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 2
Length of query: 79
Length of database: 17,035,801
Length adjustment: 50
Effective length of query: 29
Effective length of database: 14,425,101
Effective search space: 418327929
Effective search space used: 418327929
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)