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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0402200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to 110 kDa 4SNc-Tudor domain protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.98 (0.0189) R2 : 0.0114
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0913 (0.0398) R2dN8 : 0.0148 R2N8 : 0.0114
σ : 0.356
deviance : 58.06
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
55.54 0.35 2.99 0.0916 0.0296 -0.212 -0.305 0.828 0.0976 1.31 1.071 16 -- --
56.04 0.351 2.98 0.127 0.0344 -0.135 -0.389 -- 0.107 1.9 1.004 16 -- --
55.86 0.351 2.99 0.0984 0.0303 -0.191 -- 0.83 0.1 1.95 1.071 16 -- --
56.62 0.353 2.98 0.14 0.0376 -0.125 -- -- 0.109 2.59 1.099 16 -- --
55.91 0.35 2.99 0.0977 -- -0.204 -- 0.84 0.101 -- 1.071 16 -- --
56.63 0.353 2.98 0.144 0.0703 -- -0.371 -- 0.105 2.4 -- -- -- --
57.11 0.354 2.98 0.154 0.0736 -- -- -- 0.107 3.39 -- -- -- --
56.69 0.352 2.98 0.14 -- -0.141 -- -- 0.11 -- 1.099 16 -- --
57.13 0.354 2.98 -- 0.0368 -0.137 -- -- 0.0937 2.48 1.038 16 -- --
57.41 0.354 2.98 0.157 -- -- -- -- 0.109 -- -- -- -- --
57.73 0.355 2.98 -- 0.0766 -- -- -- 0.0897 3.38 -- -- -- --
57.21 0.353 2.98 -- -- -0.153 -- -- 0.0948 -- 1.099 16 -- --
58.06 0.356 2.98 -- -- -- -- -- 0.0913 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 51.11 humidity 80.0 30 > th dose independent rect. 22 1
2 51.14 wind 9.0 1440 < th dose independent rect. 23 1
3 51.14 temperature 10.0 1440 > th dose independent rect. 23 1
6 51.14 temperature 30.0 1440 < th dose independent rect. 23 1
10 51.14 humidity 50.0 1440 > th dose independent rect. 23 1
20 51.14 atmosphere 995.0 1440 > th dose independent rect. 23 1
21 51.14 radiation 1.0 1440 < th dose independent rect. 23 1
41 51.14 temperature 10.0 1440 > th dose independent rect. 24 23
44 51.14 radiation 1.0 1440 < th dose dependent rect. 23 1
51 51.16 wind 5.0 30 < th dose dependent rect. 22 1
54 51.17 temperature 10.0 30 > th dose dependent rect. 22 1
56 51.17 atmosphere 995.0 30 > th dose dependent rect. 22 1
59 51.18 wind 3.0 30 < th dose independent rect. 22 1
64 51.19 temperature 10.0 30 > th dose independent rect. 22 1
66 51.19 temperature 30.0 30 < th dose independent rect. 22 1
67 51.19 humidity 50.0 30 > th dose independent rect. 22 1
70 51.19 atmosphere 995.0 30 > th dose independent rect. 22 1
71 51.19 atmosphere 1010.0 30 < th dose independent rect. 22 1
73 51.19 radiation 1.0 30 < th dose independent rect. 22 1
78 51.19 temperature 10.0 30 > th dose independent rect. 23 23
79 51.19 humidity 50.0 30 > th dose dependent rect. 22 1
81 51.19 radiation 1.0 30 < th dose dependent rect. 22 1
87 51.20 wind 1.0 30 > th dose independent rect. 22 1
91 51.20 precipitation 0.1 30 < th dose independent rect. 22 1
92 51.20 precipitation 0.1 30 < th dose dependent rect. 22 1
93 51.21 humidity 90.0 30 < th dose independent rect. 22 1
96 51.23 temperature 15.0 30 > th dose independent rect. 3 23
98 51.24 wind 3.0 30 < th dose independent rect. 2 1
99 51.24 wind 9.0 30 < th dose independent rect. 3 23
100 51.24 wind 3.0 30 < th dose dependent rect. 2 1
101 51.24 atmosphere 1005.0 30 > th dose dependent rect. 2 1
107 51.25 humidity 80.0 30 > th dose dependent rect. 2 1
110 51.26 temperature 10.0 30 > th dose independent rect. 2 1
112 51.26 temperature 25.0 30 < th dose independent rect. 2 1
114 51.26 humidity 50.0 30 > th dose independent rect. 2 1
118 51.26 atmosphere 995.0 30 > th dose independent rect. 2 1
119 51.26 atmosphere 1005.0 30 > th dose independent rect. 2 1
120 51.26 atmosphere 1010.0 30 < th dose independent rect. 2 1
122 51.26 radiation 1.0 30 < th dose independent rect. 2 1
127 51.26 precipitation 0.1 30 < th dose independent rect. 2 1
129 51.26 temperature 10.0 30 > th dose dependent rect. 2 1
131 51.26 humidity 50.0 30 > th dose dependent rect. 2 1
134 51.26 atmosphere 995.0 30 > th dose dependent rect. 2 1
136 51.26 radiation 1.0 30 < th dose dependent rect. 2 1
141 51.26 precipitation 0.1 30 < th dose dependent rect. 2 1
146 51.27 temperature 30.0 30 < th dose dependent rect. 2 1
149 51.28 atmosphere 1015.0 30 < th dose dependent rect. 2 1
152 51.29 atmosphere 1015.0 30 < th dose dependent rect. 22 1
159 51.34 wind 1.0 30 > th dose independent rect. 2 1
207 51.45 wind 1.0 30 > th dose dependent rect. 22 1
208 51.45 temperature 30.0 30 < th dose dependent rect. 22 1
211 51.46 humidity 90.0 30 < th dose dependent rect. 22 1
220 51.63 wind 9.0 30 < th dose independent rect. 23 23
226 51.76 atmosphere 995.0 30 > th dose independent rect. 3 23
233 51.84 precipitation 0.1 30 < th dose independent rect. 3 23
234 51.84 precipitation 0.1 30 < th dose dependent rect. 3 23
271 52.08 wind 9.0 4320 < th dose independent rect. 3 1
277 52.24 radiation 1.0 14400 < th dose dependent rect. 3 1
279 52.27 temperature 10.0 1440 > th dose independent rect. 3 1
282 52.27 temperature 30.0 1440 < th dose independent rect. 3 1
286 52.27 humidity 50.0 1440 > th dose independent rect. 3 1
295 52.27 atmosphere 995.0 1440 > th dose independent rect. 3 1
296 52.27 radiation 1.0 1440 < th dose independent rect. 3 1
316 52.27 temperature 10.0 1440 > th dose independent rect. 4 23
319 52.27 radiation 1.0 1440 < th dose dependent rect. 3 1
353 52.81 precipitation 0.1 30 < th dose independent rect. 23 23
354 52.81 precipitation 0.1 30 < th dose dependent rect. 23 23
355 52.82 wind 9.0 720 < th dose independent rect. 3 8
363 52.98 precipitation 0.1 720 < th dose independent rect. 3 8
364 52.98 precipitation 0.1 720 < th dose dependent rect. 3 8
365 52.99 humidity 50.0 720 > th dose independent rect. 3 8
366 53.00 temperature 10.0 720 > th dose independent rect. 3 8
367 53.00 atmosphere 995.0 720 > th dose independent rect. 3 8
368 53.00 temperature 10.0 720 > th dose independent rect. 11 16
370 53.03 humidity 50.0 30 > th dose independent rect. 3 23
371 53.06 atmosphere 995.0 30 > th dose independent rect. 23 23
374 53.10 temperature 10.0 720 > th dose independent rect. 15 8
375 53.10 temperature 10.0 720 > th dose independent rect. 23 16
376 53.11 atmosphere 995.0 720 > th dose independent rect. 11 16
377 53.11 precipitation 0.1 720 < th dose independent rect. 23 16
378 53.11 precipitation 0.1 720 < th dose dependent rect. 23 16
379 53.12 atmosphere 995.0 720 > th dose independent rect. 23 16
381 53.16 wind 1.0 30 < th dose independent rect. 24 3
382 53.16 atmosphere 995.0 720 > th dose independent rect. 15 8
389 53.26 atmosphere 1015.0 720 < th dose independent rect. 3 8
398 53.35 precipitation 0.1 720 < th dose independent rect. 15 8
400 53.35 precipitation 0.1 720 < th dose dependent rect. 15 8
403 53.41 wind 1.0 10 > th dose independent rect. 23 23
409 53.51 atmosphere 1015.0 30 < th dose independent rect. 3 23
419 53.62 wind 1.0 720 > th dose independent rect. 15 8
426 53.71 temperature 20.0 30 > th dose dependent rect. 22 5
430 53.76 precipitation 0.1 720 < th dose independent rect. 11 16
431 53.76 precipitation 0.1 720 < th dose dependent rect. 11 16
432 53.77 wind 5.0 30 < th dose dependent rect. 22 5
436 53.81 wind 5.0 30 < th dose dependent rect. 20 7
437 53.81 radiation 20.0 10 < th dose dependent rect. 3 23
440 53.87 radiation 40.0 720 < th dose independent rect. 15 8
486 53.99 temperature 10.0 30 > th dose dependent rect. 3 23
487 54.00 humidity 90.0 90 < th dose independent rect. 2 1
494 54.04 temperature 10.0 90 > th dose dependent rect. 3 18
513 54.11 temperature 25.0 270 > th dose independent rect. 19 11
529 54.17 temperature 20.0 30 > th dose independent rect. 22 5
533 54.19 temperature 25.0 270 > th dose independent rect. 19 8
573 54.27 atmosphere 1015.0 1440 < th dose independent rect. 3 1
575 54.28 wind 5.0 90 < th dose independent rect. 20 7
582 54.30 radiation 10.0 10 < th dose independent rect. 3 23
585 54.31 wind 1.0 10 < th dose independent rect. 11 16
588 54.31 temperature 30.0 30 < th dose independent rect. 3 23
594 54.32 temperature 30.0 30 < th dose independent rect. 23 23
618 54.39 wind 9.0 720 < th dose independent rect. 15 8
620 54.39 temperature 15.0 90 > th dose independent rect. 3 18
626 54.40 temperature 30.0 720 < th dose independent rect. 3 8
627 54.40 wind 9.0 720 < th dose independent rect. 23 16
629 54.40 humidity 50.0 30 > th dose dependent rect. 3 8
632 54.40 wind 3.0 30 < th dose dependent rect. 11 16
649 54.44 precipitation 0.1 1440 < th dose independent rect. 23 1
650 54.44 temperature 25.0 270 > th dose independent rect. 22 5
651 54.44 humidity 50.0 720 > th dose independent rect. 23 16
652 54.44 precipitation 0.1 1440 < th dose dependent rect. 23 1
656 54.45 wind 7.0 90 < th dose independent rect. 3 16
658 54.45 wind 7.0 90 < th dose independent rect. 3 18
677 54.47 wind 9.0 30 < th dose dependent rect. 3 23
678 54.48 radiation 30.0 30 < th dose independent rect. 3 8
692 54.50 temperature 25.0 270 < th dose independent rect. 21 10
695 54.50 atmosphere 995.0 90 > th dose independent rect. 3 18
696 54.50 humidity 50.0 30 > th dose independent rect. 23 23
709 54.53 atmosphere 995.0 90 > th dose independent rect. 3 16
716 54.54 radiation 40.0 10 < th dose dependent rect. 3 8
722 54.55 temperature 25.0 270 > th dose independent rect. 22 8
728 54.56 humidity 80.0 30 > th dose independent rect. 22 5
729 54.56 atmosphere 1015.0 90 < th dose independent rect. 21 6
730 54.56 wind 1.0 30 > th dose dependent rect. 2 1
732 54.56 atmosphere 995.0 90 > th dose dependent rect. 20 7
736 54.57 humidity 80.0 90 > th dose independent rect. 20 7
744 54.57 wind 9.0 30 < th dose dependent rect. 3 8
745 54.58 temperature 10.0 90 > th dose independent rect. 21 6
746 54.58 temperature 30.0 90 < th dose independent rect. 21 6
747 54.58 humidity 50.0 90 > th dose independent rect. 21 6
750 54.58 atmosphere 995.0 90 > th dose independent rect. 21 6
751 54.58 radiation 1.0 90 < th dose independent rect. 21 6
756 54.58 precipitation 0.1 90 < th dose independent rect. 21 6
761 54.58 atmosphere 1015.0 90 < th dose independent rect. 3 18
764 54.58 radiation 1.0 90 < th dose dependent rect. 21 6
769 54.58 precipitation 0.1 90 < th dose dependent rect. 21 6
772 54.58 wind 9.0 30 < th dose dependent rect. 11 16
795 54.61 humidity 50.0 30 > th dose dependent rect. 20 7
873 54.65 radiation 40.0 90 < th dose dependent rect. 11 16
933 54.68 atmosphere 1000.0 90 > th dose independent rect. 3 6
936 54.68 precipitation 0.1 90 < th dose independent rect. 9 18
954 54.68 precipitation 0.1 90 < th dose dependent rect. 9 18
956 54.69 precipitation 0.1 30 < th dose independent rect. 11 16
963 54.69 precipitation 0.1 30 < th dose dependent rect. 11 16
979 54.70 atmosphere 995.0 90 > th dose dependent rect. 3 6
984 54.71 wind 9.0 90 < th dose independent rect. 3 6
985 54.71 temperature 10.0 90 > th dose independent rect. 3 6
988 54.71 humidity 50.0 90 > th dose independent rect. 3 6
989 54.71 humidity 70.0 90 > th dose independent rect. 3 6
991 54.71 atmosphere 1015.0 90 < th dose independent rect. 3 6