Os02g0523500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 110 kDa 4SNc-Tudor domain protein (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os02g0523500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to 110 kDa 4SNc-Tudor domain protein (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.28 | 0.32 | 12.1 | 0.403 | 0.297 | 0.481 | 0.19 | -0.8 | 0.197 | 21.4 | 19.2 | 2601 | -- | -- |
| 47.22 | 0.32 | 12 | 0.471 | 0.291 | 0.675 | 0.185 | -- | 0.221 | 21.5 | 19.2 | 2695 | -- | -- |
| 46.38 | 0.317 | 12.1 | 0.397 | 0.301 | 0.491 | -- | -0.785 | 0.196 | 21.6 | 19.1 | 2695 | -- | -- |
| 47.25 | 0.32 | 12 | 0.49 | 0.302 | 0.663 | -- | -- | 0.215 | 21.6 | 19.18 | 2697 | -- | -- |
| 51.46 | 0.334 | 12 | 0.4 | -- | 0.516 | -- | -0.724 | 0.193 | -- | 19.19 | 2435 | -- | -- |
| 54.43 | 0.346 | 12 | 0.819 | 0.312 | -- | 0.0968 | -- | 0.353 | 21.9 | -- | -- | -- | -- |
| 54.46 | 0.346 | 12 | 0.815 | 0.311 | -- | -- | -- | 0.353 | 22 | -- | -- | -- | -- |
| 52.2 | 0.337 | 12 | 0.493 | -- | 0.671 | -- | -- | 0.213 | -- | 19.12 | 2381 | -- | -- |
| 51.28 | 0.334 | 12 | -- | 0.316 | 0.781 | -- | -- | 0.113 | 21.7 | 18.57 | 21512 | -- | -- |
| 60.26 | 0.363 | 12 | 0.818 | -- | -- | -- | -- | 0.353 | -- | -- | -- | -- | -- |
| 71.95 | 0.397 | 12 | -- | 0.314 | -- | -- | -- | 0.262 | 22.2 | -- | -- | -- | -- |
| 56.3 | 0.349 | 12 | -- | -- | 0.785 | -- | -- | 0.102 | -- | 17.24 | 47520 | -- | -- |
| 77.94 | 0.412 | 12 | -- | -- | -- | -- | -- | 0.262 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.93 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 42.93 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 3 | 44.22 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 4 | 44.28 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 5 | 44.28 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 9 | 44.46 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 10 | 44.46 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 32 | 44.75 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 49 | 45.21 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 54 | 45.29 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 20 | 1 |
| 55 | 45.29 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 20 | 4 |
| 59 | 45.52 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 4 |
| 72 | 45.71 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 12 | 7 |
| 73 | 45.71 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 12 | 14 |
| 76 | 45.72 | wind | 1.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 87 | 45.75 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 88 | 45.77 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 104 | 45.88 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 23 | 1 |
| 141 | 46.16 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 151 | 46.18 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 152 | 46.18 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 158 | 46.19 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 171 | 46.28 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 190 | 46.30 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 191 | 46.31 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 192 | 46.31 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 193 | 46.31 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 195 | 46.31 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 219 | 46.39 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 23 | 9 |
| 233 | 46.42 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 239 | 46.44 | radiation | 10.0 | 1440 | < th | dose independent | sin | 17 | NA |
| 242 | 46.46 | wind | 1.0 | 720 | < th | dose independent | rect. | 23 | 1 |
| 269 | 46.53 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 278 | 46.54 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 22 | 3 |
| 283 | 46.56 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 19 | NA |
| 299 | 46.63 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 305 | 46.67 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 309 | 46.68 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 11 |
| 321 | 46.70 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 338 | 46.75 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 11 |
| 348 | 46.76 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 353 | 46.78 | temperature | 20.0 | 10 | > th | dose independent | sin | 9 | NA |
| 371 | 46.80 | temperature | 20.0 | 90 | > th | dose independent | sin | 10 | NA |
| 372 | 46.81 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 389 | 46.84 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 390 | 46.84 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 410 | 46.88 | temperature | 20.0 | 720 | > th | dose independent | rect. | 14 | 17 |
| 421 | 46.91 | temperature | 20.0 | 720 | > th | dose independent | rect. | 11 | 19 |
| 424 | 46.92 | wind | 1.0 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 446 | 46.95 | temperature | 20.0 | 720 | > th | dose independent | sin | 13 | NA |
| 524 | 47.03 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 541 | 47.05 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 557 | 47.06 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 24 | 8 |
| 665 | 47.23 | temperature | 20.0 | 1440 | > th | dose independent | sin | 9 | NA |
| 678 | 47.25 | temperature | 20.0 | 1440 | < th | dose independent | sin | 9 | NA |
| 685 | 47.25 | temperature | 20.0 | 90 | > th | dose independent | rect. | 19 | 14 |
| 714 | 47.28 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 14 |
| 719 | 47.29 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 736 | 47.31 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 17 | 12 |
| 738 | 47.31 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 743 | 47.32 | wind | 1.0 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 751 | 47.33 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 17 | 6 |
| 787 | 47.36 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 791 | 47.37 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 855 | 47.42 | radiation | 10.0 | 4320 | > th | dose dependent | rect. | 17 | 14 |
| 856 | 47.43 | wind | 1.0 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 884 | 47.45 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 17 | 10 |
| 916 | 47.47 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 918 | 47.47 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 21 | 11 |
| 928 | 47.48 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 933 | 47.49 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 935 | 47.49 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 937 | 47.49 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 996 | 47.49 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |