BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0380200 Os04g0380200|AK067334
         (287 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0380200  Conserved hypothetical protein                      400   e-112
Os01g0920100  Conserved hypothetical protein                       71   1e-12

>Os04g0380200 Conserved hypothetical protein
          Length = 287

 Score =  400 bits (1029), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/287 (73%), Positives = 210/287 (73%)

Query: 1   MGTWGARRPASTVVRTAPSTVAACTRTHRIRIXXXXXXXXXNNGFGVXXXXXXXXXXXXX 60
           MGTWGARRPASTVVRTAPSTVAACTRTHRIRI         NNGFGV             
Sbjct: 1   MGTWGARRPASTVVRTAPSTVAACTRTHRIRIPPSSSSPQPNNGFGVSLRLPLPPLRVRL 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXQRVLAFRSRGAGAHMRFRFRNKAAAAGDGSRPASSPPNX 120
                                QRVLAFRSRGAGAHMRFRFRNKAAAAGDGSRPASSPPN 
Sbjct: 61  PCSSSPLLSTPPPPPPPPPPPQRVLAFRSRGAGAHMRFRFRNKAAAAGDGSRPASSPPNA 120

Query: 121 XXXXXXXXXXXXXXXXXXESPDQDSTRNGSKDESFFEARPWLDSDSEDDFHSVRGDFTPS 180
                             ESPDQDSTRNGSKDESFFEARPWLDSDSEDDFHSVRGDFTPS
Sbjct: 121 GKFAAPVAGGGGAADVAGESPDQDSTRNGSKDESFFEARPWLDSDSEDDFHSVRGDFTPS 180

Query: 181 RGTTPDHQRQSPFAGRISVDRSEPSLIXXXXXXXXXXXXXXXYDDDSVADVGSEIENGAV 240
           RGTTPDHQRQSPFAGRISVDRSEPSLI               YDDDSVADVGSEIENGAV
Sbjct: 181 RGTTPDHQRQSPFAGRISVDRSEPSLIEKKQRLLELLQEKQQYDDDSVADVGSEIENGAV 240

Query: 241 HAEEYLKSSRKGAKANRASKSRGGCFPSSFWKIKFRSCRKKRKEQND 287
           HAEEYLKSSRKGAKANRASKSRGGCFPSSFWKIKFRSCRKKRKEQND
Sbjct: 241 HAEEYLKSSRKGAKANRASKSRGGCFPSSFWKIKFRSCRKKRKEQND 287



>Os01g0920100 Conserved hypothetical protein
          Length = 231

 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/41 (73%), Positives = 37/41 (90%)

Query: 148 NGSKDESFFEARPWLDSDSEDDFHSVRGDFTPSRGTTPDHQ 188
           +GSKDE FF++R WLDSD EDDF+SV GDFTPSRG+TP++Q
Sbjct: 63  SGSKDEMFFDSRAWLDSDCEDDFYSVNGDFTPSRGSTPNYQ 103



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.129    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,358,676
Number of extensions: 304683
Number of successful extensions: 883
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 881
Number of HSP's successfully gapped: 2
Length of query: 287
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 187
Effective length of database: 11,814,401
Effective search space: 2209292987
Effective search space used: 2209292987
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)