Os04g0380200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0380200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.7 | 0.447 | 6.97 | -2.55 | 0.972 | 1.84 | 0.716 | -4.69 | 0.231 | 4.85 | 23.36 | 1351 | -- | -- |
| 101.94 | 0.47 | 6.83 | -1.26 | 1.05 | 1.55 | 0.401 | -- | 0.507 | 4.83 | 20.64 | 1343 | -- | -- |
| 91.99 | 0.447 | 6.97 | -2.51 | 0.983 | 1.82 | -- | -4.43 | 0.227 | 4.89 | 23.17 | 1354 | -- | -- |
| 102.19 | 0.471 | 6.83 | -1.2 | 0.979 | 1.51 | -- | -- | 0.539 | 4.93 | 21.11 | 1327 | -- | -- |
| 139.19 | 0.549 | 6.99 | -2.54 | -- | 2.07 | -- | -4.87 | 0.254 | -- | 23.69 | 1288 | -- | -- |
| 176.4 | 0.623 | 6.75 | -0.675 | 1.12 | -- | 0.758 | -- | 0.892 | 4.46 | -- | -- | -- | -- |
| 177.95 | 0.625 | 6.75 | -0.681 | 1.12 | -- | -- | -- | 0.888 | 4.5 | -- | -- | -- | -- |
| 150.27 | 0.571 | 6.84 | -1.21 | -- | 1.65 | -- | -- | 0.546 | -- | 22.06 | 1275 | -- | -- |
| 136.77 | 0.545 | 6.78 | -- | 0.985 | 1.19 | -- | -- | 0.772 | 4.92 | 22.2 | 1275 | -- | -- |
| 245.12 | 0.732 | 6.76 | -0.637 | -- | -- | -- | -- | 0.918 | -- | -- | -- | -- | -- |
| 190.16 | 0.645 | 6.73 | -- | 1.11 | -- | -- | -- | 0.964 | 4.51 | -- | -- | -- | -- |
| 184.96 | 0.633 | 6.79 | -- | -- | 1.36 | -- | -- | 0.76 | -- | 22.8 | 1267 | -- | -- |
| 255.82 | 0.747 | 6.74 | -- | -- | -- | -- | -- | 0.988 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 90.74 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 3 | 90.86 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 8 | 90.94 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 19 |
| 83 | 91.75 | temperature | 25 | 1440 | > th | dose dependent | sin | 17 | NA |
| 276 | 95.24 | temperature | 25 | 1440 | > th | dose dependent | rect. | 3 | 20 |
| 291 | 95.26 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 563 | 96.70 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 618 | 97.18 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 640 | 97.50 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 10 |
| 649 | 97.59 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 10 |
| 729 | 98.53 | temperature | 25 | 1440 | < th | dose independent | rect. | 4 | 20 |
| 748 | 98.68 | temperature | 25 | 1440 | > th | dose independent | rect. | 5 | 19 |
| 783 | 98.99 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 7 |
| 828 | 99.28 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 13 |
| 850 | 99.43 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 863 | 99.51 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 894 | 99.65 | temperature | 25 | 1440 | > th | dose independent | sin | 17 | NA |
| 898 | 99.66 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 902 | 99.68 | temperature | 25 | 1440 | < th | dose independent | rect. | 8 | 16 |
| 937 | 99.81 | wind | 5 | 43200 | > th | dose dependent | sin | 22 | NA |
| 982 | 99.96 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 990 | 99.98 | temperature | 25 | 1440 | < th | dose independent | sin | 17 | NA |