BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0380200 Os04g0380200|AK067334
         (287 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G27210.1  | chr3:10045458-10047222 REVERSE LENGTH=235           61   6e-10
AT3G01860.1  | chr3:302869-304329 FORWARD LENGTH=224               59   3e-09
AT5G40860.1  | chr5:16370470-16371985 FORWARD LENGTH=247           55   4e-08

>AT3G27210.1 | chr3:10045458-10047222 REVERSE LENGTH=235
          Length = 234

 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 25/34 (73%), Positives = 30/34 (88%)

Query: 152 DESFFEARPWLDSDSEDDFHSVRGDFTPSRGTTP 185
           DE+FF+++PWL SDS+DDFHSV GDFTPS G TP
Sbjct: 82  DETFFDSQPWLQSDSDDDFHSVNGDFTPSLGNTP 115



>AT3G01860.1 | chr3:302869-304329 FORWARD LENGTH=224
          Length = 223

 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/48 (58%), Positives = 35/48 (72%), Gaps = 3/48 (6%)

Query: 151 KDESFFEARPWLDSDSEDDFHSVRGDFTPSRGTTPDHQR---QSPFAG 195
           +D  FF++R WLDSD +DDF SV G+FTPSRGTTP H +   Q+P  G
Sbjct: 63  EDMIFFDSRGWLDSDCDDDFMSVGGEFTPSRGTTPVHHKFCDQTPHQG 110



>AT5G40860.1 | chr5:16370470-16371985 FORWARD LENGTH=247
          Length = 246

 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 23/34 (67%), Positives = 28/34 (82%)

Query: 152 DESFFEARPWLDSDSEDDFHSVRGDFTPSRGTTP 185
           DE++F++  W  SDSEDDF+SVRGDFTPS G TP
Sbjct: 91  DETYFDSHQWQQSDSEDDFYSVRGDFTPSVGNTP 124



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.129    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,900,740
Number of extensions: 168651
Number of successful extensions: 384
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 384
Number of HSP's successfully gapped: 3
Length of query: 287
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 189
Effective length of database: 8,419,801
Effective search space: 1591342389
Effective search space used: 1591342389
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)