Os01g0920100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0920100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 69.1 | 0.391 | 13 | 1.96 | 0.99 | 0.616 | 1.16 | -0.546 | 0.763 | 17.7 | 19.15 | 1338 | -- | -- |
| 69.73 | 0.389 | 13 | 1.92 | 0.995 | 0.61 | 1.19 | -- | 0.744 | 17.8 | 19.12 | 1316 | -- | -- |
| 72.3 | 0.396 | 13 | 1.96 | 0.995 | 0.611 | -- | -0.567 | 0.761 | 17.6 | 19.11 | 1326 | -- | -- |
| 73 | 0.398 | 13 | 1.92 | 0.992 | 0.601 | -- | -- | 0.751 | 17.5 | 19.14 | 1339 | -- | -- |
| 123.7 | 0.518 | 13 | 1.98 | -- | 0.642 | -- | -0.32 | 0.757 | -- | 19.5 | 1371 | -- | -- |
| 82.85 | 0.427 | 13 | 1.85 | 1.01 | -- | 1.11 | -- | 0.606 | 17.3 | -- | -- | -- | -- |
| 85.83 | 0.434 | 13 | 1.85 | 1.01 | -- | -- | -- | 0.611 | 17.1 | -- | -- | -- | -- |
| 123.97 | 0.519 | 12.9 | 1.86 | -- | 0.598 | -- | -- | 0.755 | -- | 19.5 | 1376 | -- | -- |
| 148.19 | 0.567 | 13 | -- | 0.987 | 0.698 | -- | -- | 0.774 | 17.7 | 19.86 | 25685 | -- | -- |
| 139.73 | 0.552 | 13 | 1.81 | -- | -- | -- | -- | 0.585 | -- | -- | -- | -- | -- |
| 175.73 | 0.62 | 13 | -- | 0.982 | -- | -- | -- | 0.405 | 17.2 | -- | -- | -- | -- |
| 184.66 | 0.633 | 13 | -- | -- | 0.861 | -- | -- | 0.453 | -- | 39.88 | 35936 | -- | -- |
| 226.23 | 0.702 | 13 | -- | -- | -- | -- | -- | 0.384 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.89 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 68.74 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 3 | 68.76 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 4 | 68.83 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 5 | 68.85 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 6 | 68.89 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 13 | 69.30 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 14 | 69.31 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 19 |
| 17 | 69.36 | radiation | 10 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 31 | 69.46 | temperature | 15 | 14400 | > th | dose dependent | rect. | 20 | 3 |
| 36 | 69.49 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 40 | 69.51 | temperature | 30 | 4320 | < th | dose dependent | rect. | 9 | 1 |
| 43 | 69.52 | temperature | 30 | 14400 | < th | dose dependent | rect. | 20 | 3 |
| 45 | 69.53 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 46 | 69.53 | temperature | 30 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 50 | 69.53 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 13 |
| 52 | 69.55 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 4 |
| 53 | 69.55 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 57 | 69.55 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 18 |
| 75 | 69.60 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 77 | 69.60 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 80 | 69.61 | humidity | 90 | 14400 | > th | dose independent | sin | 11 | NA |
| 88 | 69.62 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 98 | 69.63 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 5 |
| 120 | 69.66 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 136 | 69.67 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 7 |
| 138 | 69.67 | humidity | 90 | 14400 | > th | dose dependent | sin | 7 | NA |
| 186 | 69.74 | humidity | 90 | 14400 | > th | dose dependent | sin | 11 | NA |
| 225 | 69.79 | temperature | 15 | 14400 | > th | dose dependent | rect. | 20 | 15 |
| 275 | 69.84 | temperature | 30 | 14400 | < th | dose dependent | rect. | 19 | 16 |
| 365 | 69.90 | temperature | 15 | 14400 | > th | dose dependent | sin | 9 | NA |
| 369 | 69.90 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 448 | 69.94 | temperature | 10 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 478 | 69.95 | temperature | 30 | 14400 | < th | dose dependent | rect. | 4 | 6 |
| 536 | 69.97 | temperature | 30 | 14400 | < th | dose dependent | sin | 9 | NA |
| 711 | 70.02 | temperature | 15 | 14400 | > th | dose dependent | no | NA | NA |
| 738 | 70.02 | temperature | 15 | 14400 | > th | dose dependent | rect. | 9 | 23 |
| 777 | 70.03 | temperature | 15 | 14400 | > th | dose dependent | rect. | 1 | 23 |
| 818 | 70.05 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 912 | 70.07 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 22 |