BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0920100 Os01g0920100|AK069808
         (231 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0920100  Conserved hypothetical protein                      397   e-111
Os04g0380200  Conserved hypothetical protein                       74   6e-14

>Os01g0920100 Conserved hypothetical protein
          Length = 231

 Score =  397 bits (1021), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/231 (85%), Positives = 197/231 (85%)

Query: 1   MGSCASVHKDLGFPKKLFLASSPTXXXXXXXXXXXXXXVSVDLKRKEXXXXXXXGVGVRS 60
           MGSCASVHKDLGFPKKLFLASSPT              VSVDLKRKE       GVGVRS
Sbjct: 1   MGSCASVHKDLGFPKKLFLASSPTKEKKAANGKGGGGGVSVDLKRKEQQQAAAAGVGVRS 60

Query: 61  PGSGSKDEMFFDSRAWLDSDCEDDFYSVNGDFTPSRGSTPNYQPRTQTVMSNVFVPDNVQ 120
           PGSGSKDEMFFDSRAWLDSDCEDDFYSVNGDFTPSRGSTPNYQPRTQTVMSNVFVPDNVQ
Sbjct: 61  PGSGSKDEMFFDSRAWLDSDCEDDFYSVNGDFTPSRGSTPNYQPRTQTVMSNVFVPDNVQ 120

Query: 121 NSKSPEPSPTGRRKLAELLQEAMQNGSEDSTDASVPDISKNEKQQFQPVSAAVKPVXXXX 180
           NSKSPEPSPTGRRKLAELLQEAMQNGSEDSTDASVPDISKNEKQQFQPVSAAVKPV    
Sbjct: 121 NSKSPEPSPTGRRKLAELLQEAMQNGSEDSTDASVPDISKNEKQQFQPVSAAVKPVSESS 180

Query: 181 XXXXXXXXXIREAKNRKEKAWYTGRCCLPAFVHTLDLDERRQKMTPGPCAV 231
                    IREAKNRKEKAWYTGRCCLPAFVHTLDLDERRQKMTPGPCAV
Sbjct: 181 STCSTEPTPIREAKNRKEKAWYTGRCCLPAFVHTLDLDERRQKMTPGPCAV 231



>Os04g0380200 Conserved hypothetical protein
          Length = 287

 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 59/97 (60%), Gaps = 14/97 (14%)

Query: 63  SGSKDEMFFDSRAWLDSDCEDDFYSVNGDFTPSRGSTPNYQPRTQTVMSNVFVPDNVQNS 122
           +GSKDE FF++R WLDSD EDDF+SV GDFTPSRG+TP++Q R       + V  +    
Sbjct: 148 NGSKDESFFEARPWLDSDSEDDFHSVRGDFTPSRGTTPDHQ-RQSPFAGRISVDRS---- 202

Query: 123 KSPEPSPTGRR-KLAELLQEAMQNGSEDSTDASVPDI 158
              EPS   ++ +L ELLQE  Q       D SV D+
Sbjct: 203 ---EPSLIEKKQRLLELLQEKQQY-----DDDSVADV 231



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.129    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,567,926
Number of extensions: 298767
Number of successful extensions: 592
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 592
Number of HSP's successfully gapped: 2
Length of query: 231
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 133
Effective length of database: 11,918,829
Effective search space: 1585204257
Effective search space used: 1585204257
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 154 (63.9 bits)