BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0920100 Os01g0920100|AK069808
(231 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G27210.1 | chr3:10045458-10047222 REVERSE LENGTH=235 71 5e-13
AT5G40860.1 | chr5:16370470-16371985 FORWARD LENGTH=247 66 1e-11
AT3G01860.1 | chr3:302869-304329 FORWARD LENGTH=224 65 2e-11
>AT3G27210.1 | chr3:10045458-10047222 REVERSE LENGTH=235
Length = 234
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 84/168 (50%), Gaps = 33/168 (19%)
Query: 67 DEMFFDSRAWLDSDCEDDFYSVNGDFTPSRGSTP-----NYQPRTQTVMSNVFVPDNVQN 121
DE FFDS+ WL SD +DDF+SVNGDFTPS G+TP + PR ++ + P +
Sbjct: 82 DETFFDSQPWLQSDSDDDFHSVNGDFTPSLGNTPKSSFSDRPPRFHNLIFHEKKPS--RG 139
Query: 122 SKSPEPSPTGRRKLAELLQEAMQNGSEDSTDA---SVPDISKNEKQQFQPVSAAVKPVXX 178
S SP P P R+KL EL +++++ E+S + S P +S ++F +
Sbjct: 140 SSSPAPLPR-RKKLGELFRDSIREEREESGSSSAISTPYLSGANSREFNDTAI------- 191
Query: 179 XXXXXXXXXXXIREAKNRKEKAWYTGRCCLPAFVHT-LDLDERRQKMT 225
E + +K+ W+ R CLP F ERR+KM+
Sbjct: 192 -------------EKEEKKKSNWHHHR-CLPGFSSCGGSFMERRKKMS 225
>AT5G40860.1 | chr5:16370470-16371985 FORWARD LENGTH=247
Length = 246
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 72/147 (48%), Gaps = 14/147 (9%)
Query: 67 DEMFFDSRAWLDSDCEDDFYSVNGDFTPSRGSTP--NYQPRTQTVMSNVFVPDNVQNSKS 124
DE +FDS W SD EDDFYSV GDFTPS G+TP + + + S +F + + S S
Sbjct: 91 DETYFDSHQWQQSDSEDDFYSVRGDFTPSVGNTPRCSISEKLPRIHSPLFEGEKPRVSFS 150
Query: 125 PEPSPTGRRKLAELLQEAMQNGSEDSTDASVPDISKNEKQQFQPVSAAVKPVXXXXXXXX 184
P+P R+KL EL +++++ + S S+ K+ S +K +
Sbjct: 151 HSPAPR-RKKLGELFRDSIREERAVILEESSEYQSEKSKKSSCDNSGELKVI-------- 201
Query: 185 XXXXXIREAKNRKEKAWYTGRCCLPAF 211
++E KN K Y R CLP F
Sbjct: 202 --EESVKEKKNLKSPLNYHHR-CLPRF 225
>AT3G01860.1 | chr3:302869-304329 FORWARD LENGTH=224
Length = 223
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 36/42 (85%), Gaps = 1/42 (2%)
Query: 63 SGSKDEM-FFDSRAWLDSDCEDDFYSVNGDFTPSRGSTPNYQ 103
SG+K++M FFDSR WLDSDC+DDF SV G+FTPSRG+TP +
Sbjct: 59 SGNKEDMIFFDSRGWLDSDCDDDFMSVGGEFTPSRGTTPVHH 100
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.129 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,745,081
Number of extensions: 184793
Number of successful extensions: 416
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 415
Number of HSP's successfully gapped: 3
Length of query: 231
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 136
Effective length of database: 8,502,049
Effective search space: 1156278664
Effective search space used: 1156278664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 110 (47.0 bits)