BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0367000 Os04g0367000|Os04g0367000
(171 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0367000 300 3e-82
Os04g0286000 EGF domain containing protein 103 9e-23
Os10g0180800 EGF domain containing protein 98 3e-21
Os04g0367201 78 3e-15
Os01g0364400 EGF-like calcium-binding domain containing pro... 75 2e-14
Os01g0365066 66 1e-11
Os02g0633066 Growth factor, receptor domain containing protein 63 9e-11
>Os04g0367000
Length = 171
Score = 300 bits (768), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 147/171 (85%), Positives = 147/171 (85%)
Query: 1 MPTGGAPTAPTLAGCNTSCGNLTFEYPFGIGQGCFRQPNFELTCLHGNHLQPPSLFLQGG 60
MPTGGAPTAPTLAGCNTSCGNLTFEYPFGIGQGCFRQPNFELTCLHGNHLQPPSLFLQGG
Sbjct: 1 MPTGGAPTAPTLAGCNTSCGNLTFEYPFGIGQGCFRQPNFELTCLHGNHLQPPSLFLQGG 60
Query: 61 TQXXXXXXXXXXXXXXXXXXXXXXXXTISVVPGVDVYNYTWTYPESFFPLYATVQITGCD 120
TQ TISVVPGVDVYNYTWTYPESFFPLYATVQITGCD
Sbjct: 61 TQVVDDIVVSSSDDNNVPSVSVSMSDTISVVPGVDVYNYTWTYPESFFPLYATVQITGCD 120
Query: 121 FDVYFIQYNESMLLCNITCPNEIFTEGEAKKNCNGNPYISQGCSRDKDNSY 171
FDVYFIQYNESMLLCNITCPNEIFTEGEAKKNCNGNPYISQGCSRDKDNSY
Sbjct: 121 FDVYFIQYNESMLLCNITCPNEIFTEGEAKKNCNGNPYISQGCSRDKDNSY 171
>Os04g0286000 EGF domain containing protein
Length = 748
Score = 103 bits (256), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 79/169 (46%), Gaps = 26/169 (15%)
Query: 10 PTLAGCNTSCGNLTFEYPFGIGQGCFRQPNFELTCLHGNHLQPPSLFLQGGT-------- 61
TLA C SCG ++ YPFGIG GCFRQP+F L C N QPP L L GT
Sbjct: 2 ATLASCPKSCGQMSIHYPFGIGAGCFRQPDFNLIC--DNSTQPPKLLLHDGTTEVVGDED 59
Query: 62 ------------QXXXXXXXXXXXXXXXXXXXXXXXXTISVVPGVDVYNYTWTYPESFFP 109
+ TI +VPGV YNY+W SF
Sbjct: 60 SLRRTRYPVRGVRIWRSDSSIGMDVGLSEWIDINISATIPMVPGVAEYNYSWNLS-SFSI 118
Query: 110 LYATVQITGCDFDVYFI---QYNESMLLCNITCPNEIFTEGEAKKNCNG 155
A++ ITGC+FD Y I Y+ + +C +CPN+ TE A+++CNG
Sbjct: 119 FDASLNITGCEFDTYIINNKSYSPTTAICKSSCPNKEITETVARQSCNG 167
>Os10g0180800 EGF domain containing protein
Length = 993
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 72/160 (45%), Gaps = 10/160 (6%)
Query: 4 GGAPTAPTLAGCNTSCGNLTFEYPFGIGQGCFRQPNFELTCLHGNHLQPPSLFLQGGTQX 63
P+A TLA C CGNL+F+YPFGIG GCFR P+F LTC QPP L L
Sbjct: 95 ASLPSAATLANCPKRCGNLSFDYPFGIGDGCFRHPDFSLTC--NATTQPPKLLLHINESV 152
Query: 64 XXXXXXXXXXXXXXX-----XXXXXXXXTISVVPGVDVYNYTWTYPESFFPLYATVQIT- 117
I + GVDVYN TW P F + + IT
Sbjct: 153 EVIDNIEVVGKDIAEFFYFNFFMVAFNHLIPIKAGVDVYNLTWKAPGISFTISEMMIITV 212
Query: 118 -GCDFDVYFI-QYNESMLLCNITCPNEIFTEGEAKKNCNG 155
CD DV+ I Q N LLC + CPN+ + ++C G
Sbjct: 213 VSCDLDVFLIGQDNTPKLLCMVACPNKEIADMVYMQDCEG 252
>Os04g0367201
Length = 457
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 74/161 (45%), Gaps = 13/161 (8%)
Query: 6 APTAPTLAGCNTSCGNLTFEYPFGIGQGCFRQPNFELTCLHGNHLQPPSLFLQGG-TQXX 64
P+ TLAGC +SCG+LTF YPFGIG GCFR P+FELTC + PP L G TQ
Sbjct: 44 VPSTATLAGCQSSCGDLTFVYPFGIGSGCFRSPDFELTC--DSTTSPPRLLFHDGITQIA 101
Query: 65 XXXXXXXXXXXXXXXXXXXXXXTISVVPGVDVYNYTWT------YPESFFPLYATVQITG 118
+ V +++ + ++F+ ++ +G
Sbjct: 102 GSINIVSTEFMDTDNSVSTRFSHTISMRNASVVSWSLSPKLLEHSLDAFYLTLWGLRFSG 161
Query: 119 CDFDVYFI---QYNESMLLCNITCPN-EIFTEGEAKKNCNG 155
CDFDVY++ N++ C TCP E ++CNG
Sbjct: 162 CDFDVYWLNRPSINKATPNCTATCPKGESTGMVSPMQHCNG 202
>Os01g0364400 EGF-like calcium-binding domain containing protein
Length = 848
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 67/160 (41%), Gaps = 10/160 (6%)
Query: 3 TGGAPTAPTLAGCNTSCGNLTFEYPFGIGQGCFRQPNFELTCLHGNHLQPPSLFLQGGTQ 62
+G PTA LA C SCG YP+G+G GCFR P FELTC H +PP L L G
Sbjct: 21 SGAPPTAAKLAHCLKSCGGANISYPYGVGAGCFR-PGFELTCDHST--KPPKLLLLGVAT 77
Query: 63 XXXXXXXXXXXXXXXXXXXXXXXXTISVVPGV-DVYNYTWTYPESFF---PLYATVQITG 118
I+ PGV YN TW P P Y + G
Sbjct: 78 NTNTTTTKIVDQYRDGYVQAYVSFNIATTPGVLGTYNRTWESPGRILSIGPDYYALVAVG 137
Query: 119 CDFDVYFIQYN-ESML-LCNITCPNEIFTEGEAK-KNCNG 155
C +VY + + E ML C C + EA+ K C+G
Sbjct: 138 CGIEVYLVDPDTEDMLGYCFSMCTDMAMMHKEAEGKACSG 177
>Os01g0365066
Length = 293
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 69/161 (42%), Gaps = 17/161 (10%)
Query: 1 MPTGGAPTAPTLAGCNTSCGNLTFEYPFGIGQGCFRQPNFELTCLHGNHLQPPSLFLQGG 60
+ G P+A L C TSCG++ YPFGIG GCFR P FEL C +PP LF
Sbjct: 6 LALGVPPSARDLRHCPTSCGDVNITYPFGIGTGCFR-PGFELIC--NTTTKPPKLFFGNT 62
Query: 61 TQXXXXXXXXXXXXXXXXXXXXXXXXTISVVPG-VDVYNYTWTYPESFFPLYAT--VQIT 117
T+ I+ PG + Y+ +W P Y T + I
Sbjct: 63 TE--------ISYQYPYGYVRASVVFNIATTPGLLGTYSRSWQAPGRVLSTYTTNSLVIV 114
Query: 118 GCDFDVYFIQYNESML--LCNITCPNEIFTEGE-AKKNCNG 155
GC DVY + + ++L C C N + + + + CNG
Sbjct: 115 GCGIDVYLFRSHTNILQGYCRSECTNMALMDKKLSGRPCNG 155
>Os02g0633066 Growth factor, receptor domain containing protein
Length = 901
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 73/166 (43%), Gaps = 21/166 (12%)
Query: 7 PTAPTLAGCNTSCGNLT-FEYPFGIGQGCFRQPNFELTCLHGNHLQPPSLFLQGGTQXXX 65
P+ +LA C +SCG++ YPFGIG GCFR+ FEL C + P L+++ GT
Sbjct: 40 PSNDSLAHCPSSCGDVDDIAYPFGIGPGCFRE-GFELKC--NTSTKTPKLYMKDGT---- 92
Query: 66 XXXXXXXXXXXXXXXXXXXXXTISVVPGVDVYNYTWTYPESFFPLYA--TVQITGCDFDV 123
I++ PG D YN +W P + T I GC+ DV
Sbjct: 93 ----TQILYVGDDDLWAPMHFNITMKPGTDTYNISWVSPRKGVTISQRNTFYIIGCNIDV 148
Query: 124 YFIQY--NESMLLCNITCPNE-IFTEGEAKKNCNGNPYISQGCSRD 166
+Y +++ C C E + TEG CNG S SRD
Sbjct: 149 TLFEYGTRDAVGYCVSRCDGEKVPTEGP----CNGKGCCSIKLSRD 190
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.140 0.464
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,157,949
Number of extensions: 218892
Number of successful extensions: 465
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 461
Number of HSP's successfully gapped: 10
Length of query: 171
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 77
Effective length of database: 12,127,685
Effective search space: 933831745
Effective search space used: 933831745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 152 (63.2 bits)