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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0367000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.01 (0.0592) R2 : 0.572
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.15 (0.144) R2dC : 0.453 R2C : 0.446
β3 : -2.23 (0.219) R2dE : 0.106 R2E : 0.0434
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.88 (0.129) R2dN8 : 0.0619 R2N8 : 0.00397
σ : 1.1
deviance : 556.11
__
_____
C
peak time of C : 21.5
E
wheather : temperature
threshold : 19.6
memory length : 2734
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
550.43 1.1 6.03 -0.824 3.15 -2.85 -0.0546 -0.9 -1.08 21.6 19.8 4117 -- --
546.55 1.09 6.05 -0.7 3.15 -2.51 -0.0292 -- -1.04 21.5 20 2770 -- --
550.25 1.09 6.03 -0.824 3.14 -2.91 -- -0.969 -1.08 21.5 19.69 4113 -- --
546.53 1.09 6.05 -0.714 3.15 -2.51 -- -- -1.05 21.5 20 2770 -- --
1099.44 1.54 5.95 -0.631 -- -3.06 -- -0.787 -1.09 -- 19.9 2334 -- --
669.63 1.21 5.91 0.65 3.17 -- 0.0934 -- -0.421 21.7 -- -- -- --
669.67 1.21 5.91 0.646 3.17 -- -- -- -0.421 21.7 -- -- -- --
1068.56 1.52 5.96 -0.223 -- -2.34 -- -- -1.14 -- 21.9 856 -- --
556.11 1.1 6.01 -- 3.15 -2.23 -- -- -0.88 21.5 19.6 2734 -- --
1266.09 1.66 5.82 0.674 -- -- -- -- -0.426 -- -- -- -- --
680.68 1.22 5.93 -- 3.17 -- -- -- -0.493 21.7 -- -- -- --
947.95 1.43 5.98 -- -- -2.44 -- -- -0.921 -- 26.3 727 -- --
1278.08 1.67 5.84 -- -- -- -- -- -0.501 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 521.32 wind 1 14400 > th dose independent rect. 23 4
3 522.91 wind 1 14400 < th dose independent rect. 23 4
15 534.15 wind 1 14400 < th dose dependent rect. 22 6
19 535.36 wind 1 14400 < th dose dependent rect. 23 4
26 537.23 wind 1 43200 > th dose independent rect. 20 16
28 537.49 wind 7 14400 < th dose dependent rect. 22 1
33 537.76 atmosphere 1015 43200 > th dose independent rect. 23 1
35 537.91 atmosphere 1015 43200 < th dose independent rect. 23 1
44 538.60 wind 1 14400 < th dose dependent rect. 22 10
48 538.86 wind 1 43200 < th dose dependent rect. 19 18
63 539.27 wind 1 14400 < th dose dependent rect. 19 13
73 540.22 wind 1 43200 < th dose independent rect. 19 18
81 541.18 wind 1 14400 < th dose dependent sin 12 NA
104 541.79 wind 1 14400 > th dose independent rect. 22 9
113 542.36 wind 1 43200 < th dose dependent rect. 16 21
155 543.27 wind 1 14400 > th dose dependent rect. 22 1
158 543.32 wind 1 43200 < th dose dependent rect. 3 23
177 543.78 wind 1 14400 < th dose independent rect. 22 10
209 544.61 wind 7 14400 < th dose dependent rect. 21 3
216 544.74 temperature 20 4320 < th dose independent rect. 22 1
224 544.88 wind 1 14400 < th dose independent rect. 19 13
251 545.24 temperature 20 4320 < th dose dependent rect. 22 2
274 545.67 humidity 90 10 < th dose independent rect. 24 14
285 545.81 wind 1 43200 > th dose independent sin 8 NA
298 546.04 wind 1 43200 < th dose dependent rect. 8 23
335 546.45 wind 1 43200 < th dose dependent no NA NA
336 546.46 atmosphere 1015 43200 > th dose dependent rect. 23 1
347 546.55 wind 1 14400 > th dose independent sin 11 NA
355 546.61 wind 1 43200 > th dose independent rect. 11 20
362 546.69 wind 1 43200 < th dose dependent rect. 22 23
423 547.22 atmosphere 1015 43200 < th dose independent sin 13 NA
427 547.25 atmosphere 1015 43200 > th dose independent sin 13 NA
467 547.49 wind 7 14400 < th dose independent rect. 18 2
493 547.71 wind 1 14400 < th dose independent sin 11 NA
545 548.21 wind 1 43200 > th dose independent rect. 11 22
548 548.23 temperature 20 4320 > th dose independent rect. 22 1
595 548.66 atmosphere 1010 43200 > th dose dependent rect. 16 1
602 548.69 wind 1 43200 < th dose dependent rect. 1 23
615 548.78 wind 1 43200 > th dose independent rect. 9 1
685 549.33 atmosphere 1015 43200 > th dose dependent rect. 21 9
705 549.57 humidity 60 43200 < th dose independent rect. 21 12
726 549.70 temperature 20 1440 < th dose independent rect. 23 9
732 549.73 temperature 20 4320 < th dose dependent rect. 21 4
733 549.74 atmosphere 1015 43200 < th dose independent rect. 5 1
740 549.78 temperature 20 1440 > th dose independent rect. 1 7
750 549.84 wind 1 43200 < th dose independent rect. 9 1
751 549.85 temperature 20 1440 > th dose independent rect. 3 1
767 549.98 atmosphere 1015 43200 > th dose independent rect. 5 1
774 549.99 humidity 90 43200 < th dose dependent rect. 6 1
779 550.02 wind 1 43200 < th dose dependent sin 6 NA
787 550.06 temperature 20 1440 > th dose independent rect. 3 5
805 550.14 temperature 20 4320 < th dose independent rect. 16 12
808 550.17 atmosphere 1015 43200 < th dose independent rect. 3 4
835 550.28 temperature 20 4320 > th dose independent rect. 16 12
844 550.31 temperature 20 4320 < th dose independent rect. 19 5
857 550.36 atmosphere 1015 43200 > th dose independent rect. 3 5
917 550.60 wind 1 43200 < th dose independent rect. 11 20
938 550.67 atmosphere 1015 43200 < th dose independent rect. 3 22
968 550.78 atmosphere 1015 43200 > th dose independent rect. 3 22
973 550.79 humidity 60 43200 > th dose independent rect. 21 12