BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0348000 Os04g0348000|AK103735
         (365 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0348000  Conserved hypothetical protein                      712   0.0  
Os04g0347900  Conserved hypothetical protein                       78   1e-14

>Os04g0348000 Conserved hypothetical protein
          Length = 365

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/365 (95%), Positives = 350/365 (95%)

Query: 1   MGNIVNTVNKFSGNNADGVPFRRCSYLPNSTCDENGSSVTRKSASATNGSINGHGTLYKD 60
           MGNIVNTVNKFSGNNADGVPFRRCSYLPNSTCDENGSSVTRKSASATNGSINGHGTLYKD
Sbjct: 1   MGNIVNTVNKFSGNNADGVPFRRCSYLPNSTCDENGSSVTRKSASATNGSINGHGTLYKD 60

Query: 61  VGNEEMHLATDSTSKPGCRGDTNHCTNKERETRNVIVHTDSRQNGDATNSDNAVLICNQT 120
           VGNEEMHLATDSTSKPGCRGDTNHCTNKERETRNVIVHTDSRQNGDATNSDNAVLICNQT
Sbjct: 61  VGNEEMHLATDSTSKPGCRGDTNHCTNKERETRNVIVHTDSRQNGDATNSDNAVLICNQT 120

Query: 121 AGHMSYGLDGESNRXXXXXXXXXXXXXXXKAPLEKRCRTNLQETGDLENTPNAHVSKRSR 180
           AGHMSYGLDGESNR               KAPLEKRCRTNLQETGDLENTPNAHVSKRSR
Sbjct: 121 AGHMSYGLDGESNRSSGSLAAVVSEVLVSKAPLEKRCRTNLQETGDLENTPNAHVSKRSR 180

Query: 181 LHRVSPANSLFDREACDDLIDSAHNLDCSRTPNASVHDETVPNEDKTPCTSLDVRGCEGT 240
           LHRVSPANSLFDREACDDLIDSAHNLDCSRTPNASVHDETVPNEDKTPCTSLDVRGCEGT
Sbjct: 181 LHRVSPANSLFDREACDDLIDSAHNLDCSRTPNASVHDETVPNEDKTPCTSLDVRGCEGT 240

Query: 241 PRASLKRRVNKKRTKREASYPTTPLNGNTGALVVIEPPLTRTKAKGKALSLATPESLKRS 300
           PRASLKRRVNKKRTKREASYPTTPLNGNTGALVVIEPPLTRTKAKGKALSLATPESLKRS
Sbjct: 241 PRASLKRRVNKKRTKREASYPTTPLNGNTGALVVIEPPLTRTKAKGKALSLATPESLKRS 300

Query: 301 TRSGRLIVPRLDPGSQKIIYDMDGSILAITNLESPRLQGPYSEPPPKRRKTPRCSSPGHR 360
           TRSGRLIVPRLDPGSQKIIYDMDGSILAITNLESPRLQGPYSEPPPKRRKTPRCSSPGHR
Sbjct: 301 TRSGRLIVPRLDPGSQKIIYDMDGSILAITNLESPRLQGPYSEPPPKRRKTPRCSSPGHR 360

Query: 361 RLLPF 365
           RLLPF
Sbjct: 361 RLLPF 365



>Os04g0347900 Conserved hypothetical protein
          Length = 633

 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 117/450 (26%), Positives = 178/450 (39%), Gaps = 114/450 (25%)

Query: 1   MGNIVNTVNKFSGNNADGVPFRRCSYLPNS-------TCDENGSSVTRKSASATNGSING 53
           + N++N     SGN+AD   F + SYL N        TCD + S+  ++  +A N    G
Sbjct: 198 LANLLNNSRSSSGNDADS--FEKGSYLSNKKPRFEEYTCDLDISA--KEKTTAFNEGSTG 253

Query: 54  HGTLYKDVGNEEMHLATDSTSKPGCRGDTN---HCTNKERETR----------NVIVHTD 100
              +   VGN+++ L   S SK    G+ +     T+ E  TR          N  +H+D
Sbjct: 254 SLAVCNKVGNQQIDLVVKSFSKERGHGNIDLSASLTSIEETTRDKTSEDAGNQNEFIHSD 313

Query: 101 SRQNGDATNSDNAVLICNQTAGHMSYGLDGESNRXXXXXXXXXXXXXXXKAPLEKRCRTN 160
           +      ++  N+  I         YG+  ES                    +      +
Sbjct: 314 AEYQEAGSHLVNSDSI---------YGMSTESGNQNEFIHADAEHQEVGSHVVNSDSNFD 364

Query: 161 LQ------ETGDLENTPNAHVSKRSR--LHRVSPANSLFDREACDDLI------DSAHNL 206
           +       E GD      + VS+ S+  L  V P  +    ++C D I      +S + L
Sbjct: 365 MSTDNMICEMGDGSANAGSAVSQGSKEVLATVLPERANLSPDSCLDNILPISTCNSNNCL 424

Query: 207 DCSRTPNASVH----DETVPNEDKTPCTSLDVRGC-----------------EGTPRA-- 243
           +    P  + H    +E VPNED +     DV                    +G PR+  
Sbjct: 425 ENQGFPEIAQHMTLNEEVVPNEDISTSVHSDVESLGNPVGPAEVQRSECDILQGAPRSPK 484

Query: 244 -----SLKRRVNKKRTKREASYPT--TP-------------------------LNGNTGA 271
                + ++R  +  ++  A  P   TP                         L G T +
Sbjct: 485 QNVGSAQEQRPEQSMSQGAARSPMIRTPIPDGAPSLRNQHLGSAQEQRSEHFMLKGATRS 544

Query: 272 LVVIEP-------PLTRTKAKGKALSLATPESLK-RSTRSGRLIVPRLDPGSQKIIYDMD 323
            ++  P       PLTR KAK  ++S  TPESLK R TRSGR++VP LDPG Q+I+YD D
Sbjct: 545 PMIRTPIPYGHYSPLTRGKAKSSSVS--TPESLKLRRTRSGRVVVPTLDPGCQRIVYDRD 602

Query: 324 GSILAITNL--ESPRLQGPYSEPPPKRRKT 351
           G +  +  L  ESP L+G  S  P  +R+ 
Sbjct: 603 GLVSGVAGLEFESPPLKGNESRTPESKRRV 632



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.129    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,771,447
Number of extensions: 593863
Number of successful extensions: 1564
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1562
Number of HSP's successfully gapped: 2
Length of query: 365
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 263
Effective length of database: 11,709,973
Effective search space: 3079722899
Effective search space used: 3079722899
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 157 (65.1 bits)