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Os04g0347900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.17 (0.0224) R2 : 0.896
β1 : 1.92 (0.082) R2dD : 0.13 R2D : 0.109
β2 : 1.93 (0.0581) R2dC : 0.269 R2C : 0.0525
β3 : -2.62 (0.0478) R2dE : 0.732 R2E : 0.505
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.247 (0.0478) R2dN8 : 0.00821 R2N8 : -0.0137
σ : 0.419
deviance : 80.77
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C
peak time of C : 20.4
E
wheather : radiation
threshold : 35.19
memory length : 279
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 14.9
open length of G : 16.1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
77.48 0.414 8.17 1.96 1.94 -2.58 0.482 0.577 0.256 20.3 36.28 275 15 16.1
78.82 0.413 8.17 1.95 1.95 -2.63 0.772 -- 0.262 20.4 37.08 279 14.9 16.1
78 0.411 8.17 1.95 1.95 -2.59 -- 0.738 0.252 20.3 35.44 275 14.9 16.1
80.77 0.419 8.17 1.92 1.93 -2.62 -- -- 0.247 20.4 35.19 279 14.9 16.1
136.56 0.544 8.14 1.91 -- -3.1 -- 1.33 0.144 -- 22.92 469 15.3 16.6
123.04 0.52 8.17 1.93 3.23 -- -0.414 -- 0.18 16.2 -- -- -- --
123.52 0.52 8.17 1.93 3.23 -- -- -- 0.178 16.2 -- -- -- --
120.76 0.512 8.13 1.9 -- -3.44 -- -- 0.111 -- 73.16 623 12.7 18.3
176.89 0.619 8.22 -- 1.88 -2.78 -- -- 0.0335 20.8 32.9 295 14.7 16.3
688.86 1.23 8.15 1.8 -- -- -- -- 0.0921 -- -- -- -- --
221.36 0.696 8.22 -- 3.19 -- -- -- -0.0365 16.2 -- -- -- --
211.27 0.677 8.2 -- -- -3.37 -- -- -0.101 -- 73.52 626 12.3 18.9
774.02 1.3 8.2 -- -- -- -- -- -0.107 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 77.84 radiation 40.0 270 < th dose dependent rect. 15 16
3 78.96 radiation 20.0 270 < th dose independent rect. 15 16
4 79.14 wind 7.0 270 < th dose independent rect. 7 20
9 80.66 wind 7.0 270 < th dose independent rect. 8 18
17 81.73 radiation 30.0 270 < th dose dependent rect. 3 6
19 82.04 radiation 20.0 270 < th dose independent rect. 2 7
21 82.09 humidity 50.0 270 > th dose independent rect. 15 16
33 82.86 radiation 20.0 270 < th dose independent rect. 3 5
36 83.17 precipitation 0.1 270 < th dose independent rect. 7 20
37 83.17 precipitation 0.1 270 < th dose dependent rect. 7 20
43 83.48 wind 7.0 270 < th dose independent rect. 3 4
45 83.53 precipitation 0.1 270 < th dose independent rect. 3 4
47 83.53 precipitation 0.1 270 < th dose dependent rect. 3 4
49 83.61 humidity 70.0 270 > th dose independent rect. 3 4
54 83.70 temperature 10.0 270 > th dose independent rect. 3 4
56 83.70 temperature 30.0 270 < th dose independent rect. 3 4
57 83.70 humidity 50.0 270 > th dose independent rect. 3 4
59 83.70 atmosphere 995.0 270 > th dose independent rect. 3 4
60 83.70 atmosphere 1015.0 270 < th dose independent rect. 3 4
62 83.70 temperature 10.0 270 > th dose independent rect. 7 20
67 83.93 wind 9.0 270 < th dose independent rect. 7 9
81 84.55 radiation 10.0 270 < th dose dependent rect. 3 17
84 84.62 precipitation 0.1 270 < th dose independent rect. 8 18
85 84.62 precipitation 0.1 270 < th dose dependent rect. 8 18
91 84.94 precipitation 0.1 270 < th dose independent rect. 7 9
92 84.94 precipitation 0.1 270 < th dose dependent rect. 7 9
94 85.02 wind 7.0 270 < th dose independent rect. 2 6
96 85.07 humidity 70.0 270 > th dose independent rect. 2 6
98 85.11 precipitation 0.1 270 < th dose independent rect. 2 6
99 85.11 precipitation 0.1 270 < th dose dependent rect. 2 6
102 85.23 temperature 10.0 270 > th dose independent rect. 7 9
103 85.23 atmosphere 1015.0 270 < th dose independent rect. 7 9
104 85.23 temperature 10.0 270 > th dose independent rect. 16 15
107 85.29 temperature 10.0 270 > th dose independent rect. 2 6
109 85.29 temperature 30.0 270 < th dose independent rect. 2 6
110 85.29 humidity 50.0 270 > th dose independent rect. 2 6
112 85.29 atmosphere 995.0 270 > th dose independent rect. 2 6
113 85.29 atmosphere 1015.0 270 < th dose independent rect. 2 6
114 85.29 temperature 10.0 270 > th dose independent rect. 8 18
123 85.74 wind 1.0 270 > th dose independent rect. 3 4
133 86.05 temperature 10.0 270 > th dose dependent rect. 3 4
138 86.24 radiation 1.0 270 < th dose independent rect. 3 16
154 86.40 wind 9.0 270 < th dose dependent rect. 3 4
164 86.44 atmosphere 995.0 270 > th dose independent rect. 7 9
167 86.56 humidity 50.0 270 > th dose independent rect. 3 17
176 86.69 wind 9.0 270 < th dose dependent rect. 7 20
177 86.72 wind 9.0 270 < th dose independent rect. 16 15
181 86.83 humidity 50.0 270 > th dose dependent rect. 3 4
189 86.87 atmosphere 995.0 270 > th dose independent rect. 16 15
192 87.06 radiation 1.0 270 > th dose independent rect. 7 9
196 87.07 temperature 15.0 270 > th dose independent rect. 3 17
209 87.26 wind 7.0 270 < th dose independent rect. 20 7
213 87.29 wind 9.0 270 < th dose dependent rect. 8 18
214 87.30 atmosphere 1010.0 270 < th dose independent rect. 4 2
222 87.46 temperature 10.0 270 > th dose independent rect. 20 7
223 87.46 temperature 30.0 270 < th dose independent rect. 20 7
224 87.46 humidity 50.0 270 > th dose independent rect. 20 7
227 87.46 atmosphere 995.0 270 > th dose independent rect. 20 7
228 87.46 radiation 1.0 270 < th dose independent rect. 20 7
234 87.46 atmosphere 1015.0 270 < th dose independent rect. 3 17
236 87.46 radiation 1.0 270 < th dose dependent rect. 20 7
246 87.53 wind 5.0 270 < th dose independent rect. 4 2
258 87.62 precipitation 0.1 270 < th dose independent rect. 4 2
260 87.62 precipitation 0.1 270 < th dose dependent rect. 4 2
264 87.67 precipitation 0.1 270 < th dose independent rect. 16 15
265 87.67 precipitation 0.1 270 < th dose dependent rect. 16 15
270 87.73 temperature 10.0 270 > th dose independent rect. 4 2
272 87.73 temperature 30.0 270 < th dose independent rect. 4 2
273 87.73 humidity 50.0 270 > th dose independent rect. 4 2
276 87.73 atmosphere 995.0 270 > th dose independent rect. 4 2
278 87.73 radiation 20.0 270 < th dose independent rect. 4 2
282 87.73 temperature 10.0 270 > th dose independent rect. 6 22
285 87.75 wind 1.0 270 > th dose independent rect. 2 6
286 87.75 precipitation 0.1 270 < th dose independent rect. 20 7
287 87.75 precipitation 0.1 270 < th dose dependent rect. 20 7
320 87.91 radiation 1.0 90 > th dose independent rect. 9 10
352 88.15 humidity 50.0 270 > th dose dependent rect. 20 7
367 88.29 atmosphere 995.0 270 > th dose independent rect. 7 20
379 88.43 temperature 30.0 90 < th dose independent rect. 17 16
386 88.48 radiation 10.0 270 < th dose dependent rect. 3 10
426 88.81 temperature 10.0 270 > th dose dependent rect. 4 2
427 88.81 atmosphere 995.0 270 > th dose dependent rect. 3 4
485 89.21 precipitation 0.1 270 < th dose independent rect. 3 17
487 89.21 precipitation 0.1 270 < th dose dependent rect. 3 17
490 89.25 atmosphere 995.0 270 > th dose independent rect. 8 18
501 89.38 humidity 50.0 270 > th dose independent rect. 7 8
529 89.63 wind 9.0 270 < th dose dependent rect. 4 2
541 89.84 humidity 50.0 270 > th dose independent rect. 13 8
551 89.92 humidity 50.0 270 > th dose dependent rect. 21 5
565 89.95 wind 9.0 270 < th dose independent rect. 3 17
573 89.96 atmosphere 995.0 270 > th dose dependent rect. 4 2
587 90.06 temperature 15.0 270 > th dose independent rect. 13 9
589 90.06 temperature 10.0 90 > th dose dependent rect. 9 19
591 90.09 atmosphere 995.0 270 > th dose independent rect. 3 17
592 90.10 humidity 60.0 10 > th dose independent rect. 17 16
602 90.22 humidity 50.0 270 > th dose dependent rect. 4 2
604 90.23 wind 9.0 270 < th dose independent rect. 22 15
679 90.56 wind 9.0 270 < th dose dependent rect. 7 8
691 90.57 temperature 10.0 270 > th dose independent rect. 22 15
692 90.57 atmosphere 995.0 270 > th dose independent rect. 22 15
711 90.62 temperature 10.0 1440 > th dose independent rect. 5 5
714 90.62 atmosphere 995.0 1440 > th dose independent rect. 5 5
715 90.62 atmosphere 1015.0 1440 < th dose independent rect. 5 5
717 90.62 temperature 10.0 1440 > th dose independent rect. 10 19
763 90.79 wind 9.0 270 < th dose dependent rect. 20 7
789 90.88 wind 1.0 270 > th dose independent rect. 7 8
800 90.93 wind 9.0 270 < th dose dependent rect. 21 5
817 91.02 humidity 50.0 270 > th dose dependent rect. 3 16
826 91.13 precipitation 0.1 270 < th dose independent rect. 22 15
827 91.13 precipitation 0.1 270 < th dose dependent rect. 22 15
829 91.15 wind 1.0 30 > th dose independent rect. 4 5
830 91.15 wind 1.0 270 > th dose independent rect. 15 16
858 91.27 radiation 1.0 30 > th dose independent rect. 5 4
875 91.30 humidity 50.0 270 > th dose dependent rect. 2 18
901 91.42 radiation 40.0 270 < th dose independent rect. 12 9
957 91.64 atmosphere 1010.0 270 < th dose independent rect. 13 8
976 91.74 humidity 50.0 90 > th dose dependent rect. 5 16
980 91.76 wind 1.0 270 > th dose independent rect. 8 18