BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0311100 Os04g0311100|AK059112
         (63 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0311100  Hypothetical protein                                121   1e-28
Os02g0469300  ATP-binding region, ATPase-like domain contain...    88   1e-18

>Os04g0311100 Hypothetical protein
          Length = 63

 Score =  121 bits (303), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/63 (100%), Positives = 63/63 (100%)

Query: 1  LEDAQRQLETSNKEQEALIDIFSEERGRRDLEEENLRGKLKDASSTIQDLLEQLNAARKG 60
          LEDAQRQLETSNKEQEALIDIFSEERGRRDLEEENLRGKLKDASSTIQDLLEQLNAARKG
Sbjct: 1  LEDAQRQLETSNKEQEALIDIFSEERGRRDLEEENLRGKLKDASSTIQDLLEQLNAARKG 60

Query: 61 RKF 63
          RKF
Sbjct: 61 RKF 63



>Os02g0469300 ATP-binding region, ATPase-like domain containing protein
          Length = 803

 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/62 (72%), Positives = 53/62 (85%)

Query: 1   LEDAQRQLETSNKEQEALIDIFSEERGRRDLEEENLRGKLKDASSTIQDLLEQLNAARKG 60
           LE+ Q+QL T+NKEQEAL+DIF+EER RRD E EN R KLK+ASSTIQ+LL+QLNAAR  
Sbjct: 741 LENVQKQLGTANKEQEALVDIFTEERARRDQEVENQRTKLKEASSTIQNLLDQLNAARSC 800

Query: 61  RK 62
           RK
Sbjct: 801 RK 802



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.308    0.128    0.322 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,715,239
Number of extensions: 52714
Number of successful extensions: 344
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 344
Number of HSP's successfully gapped: 2
Length of query: 63
Length of database: 17,035,801
Length adjustment: 35
Effective length of query: 28
Effective length of database: 15,208,311
Effective search space: 425832708
Effective search space used: 425832708
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 149 (62.0 bits)