Os04g0311100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os04g0311100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.91 | 0.407 | 5.79 | 1.46 | 0.779 | -0.829 | 0.576 | -1.95 | 0.834 | 12.5 | 24.87 | 698 | -- | -- |
| 78.36 | 0.412 | 5.83 | 1.14 | 0.563 | -0.787 | 0.182 | -- | 0.766 | 11.7 | 31.53 | 201 | -- | -- |
| 75.69 | 0.405 | 5.8 | 1.46 | 0.716 | -0.804 | -- | -1.77 | 0.824 | 12.2 | 25.4 | 472 | -- | -- |
| 78.48 | 0.413 | 5.83 | 1.14 | 0.562 | -0.803 | -- | -- | 0.765 | 11.6 | 31.59 | 206 | -- | -- |
| 96.93 | 0.461 | 5.84 | 1.3 | -- | -1.05 | -- | -1.36 | 0.742 | -- | 25.4 | 472 | -- | -- |
| 85.94 | 0.435 | 5.8 | 1.32 | 0.699 | -- | 0.327 | -- | 0.902 | 12.9 | -- | -- | -- | -- |
| 86.38 | 0.435 | 5.8 | 1.33 | 0.698 | -- | -- | -- | 0.903 | 12.8 | -- | -- | -- | -- |
| 89.37 | 0.442 | 5.86 | 1.05 | -- | -1.21 | -- | -- | 0.694 | -- | 31.59 | 206 | -- | -- |
| 109.75 | 0.488 | 5.87 | -- | 0.53 | -1.43 | -- | -- | 0.59 | 10.3 | 51.93 | 206 | -- | -- |
| 116.78 | 0.505 | 5.82 | 1.31 | -- | -- | -- | -- | 0.89 | -- | -- | -- | -- | -- |
| 133.09 | 0.54 | 5.84 | -- | 0.677 | -- | -- | -- | 0.755 | 12.8 | -- | -- | -- | -- |
| 116.92 | 0.505 | 5.89 | -- | -- | -1.51 | -- | -- | 0.537 | -- | 31.59 | 206 | -- | -- |
| 161.74 | 0.594 | 5.85 | -- | -- | -- | -- | -- | 0.745 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.17 | temperature | 25 | 90 | < th | dose independent | rect. | 7 | 22 |
| 2 | 73.30 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 22 |
| 3 | 73.39 | temperature | 25 | 10 | < th | dose independent | rect. | 19 | 21 |
| 6 | 73.45 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 22 |
| 8 | 73.61 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 20 |
| 9 | 73.70 | temperature | 25 | 10 | < th | dose independent | rect. | 19 | 19 |
| 12 | 73.72 | temperature | 25 | 90 | < th | dose independent | rect. | 9 | 20 |
| 24 | 73.94 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 36 | 74.24 | temperature | 25 | 720 | < th | dose dependent | rect. | 2 | 19 |
| 50 | 74.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 59 | 74.44 | temperature | 10 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 64 | 74.47 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 82 | 74.60 | temperature | 25 | 720 | < th | dose dependent | sin | 1 | NA |
| 106 | 74.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 112 | 74.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 14 |
| 117 | 74.79 | temperature | 25 | 10 | < th | dose independent | rect. | 7 | 23 |
| 124 | 74.80 | wind | 3 | 43200 | < th | dose dependent | rect. | 22 | 5 |
| 134 | 74.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 18 | 21 |
| 140 | 74.83 | temperature | 25 | 270 | > th | dose independent | rect. | 3 | 19 |
| 156 | 74.87 | temperature | 25 | 10 | < th | dose independent | rect. | 9 | 23 |
| 184 | 74.93 | temperature | 25 | 10 | < th | dose independent | rect. | 1 | 23 |
| 186 | 74.93 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 198 | 74.95 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 211 | 74.97 | temperature | 25 | 10 | < th | dose independent | rect. | 23 | 23 |
| 215 | 74.98 | temperature | 25 | 10 | < th | dose independent | no | NA | NA |
| 223 | 74.99 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 224 | 75.00 | temperature | 25 | 10 | < th | dose independent | rect. | 15 | 23 |
| 225 | 75.00 | temperature | 25 | 10 | < th | dose independent | rect. | 21 | 23 |
| 236 | 75.03 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 9 |
| 240 | 75.04 | temperature | 25 | 10 | < th | dose independent | rect. | 11 | 23 |
| 266 | 75.08 | atmosphere | 1000 | 90 | > th | dose dependent | rect. | 11 | 17 |
| 284 | 75.10 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 11 | 18 |
| 318 | 75.15 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 346 | 75.19 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 9 | 19 |
| 354 | 75.21 | temperature | 25 | 10 | < th | dose independent | rect. | 13 | 23 |
| 427 | 75.30 | temperature | 25 | 10 | > th | dose independent | rect. | 13 | 23 |
| 458 | 75.32 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 544 | 75.42 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 579 | 75.44 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 7 |
| 600 | 75.45 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 3 |
| 811 | 75.66 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 11 | 18 |
| 812 | 75.66 | temperature | 25 | 10 | > th | dose independent | rect. | 2 | 23 |
| 820 | 75.67 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 11 | 17 |
| 854 | 75.71 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 12 |
| 890 | 75.76 | temperature | 25 | 10 | > th | dose independent | rect. | 22 | 23 |
| 944 | 75.82 | temperature | 25 | 10 | > th | dose independent | no | NA | NA |
| 946 | 75.82 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 11 |
| 952 | 75.82 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 15 |
| 991 | 75.86 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 11 |