BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0311100 Os04g0311100|AK059112
         (63 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24970.1  | chr4:12831125-12835449 FORWARD LENGTH=708           59   7e-10
AT5G50780.1  | chr5:20650269-20654948 FORWARD LENGTH=820           55   8e-09

>AT4G24970.1 | chr4:12831125-12835449 FORWARD LENGTH=708
          Length = 707

 Score = 58.5 bits (140), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/51 (58%), Positives = 41/51 (80%)

Query: 4   AQRQLETSNKEQEALIDIFSEERGRRDLEEENLRGKLKDASSTIQDLLEQL 54
           +++++E   KEQE LI+IFSEER RRD EEE LR KL++AS+TI DLL ++
Sbjct: 644 SRQKIEEMKKEQENLIEIFSEERDRRDGEEEVLRNKLEEASNTIDDLLNKI 694



>AT5G50780.1 | chr5:20650269-20654948 FORWARD LENGTH=820
          Length = 819

 Score = 55.1 bits (131), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 28/52 (53%), Positives = 42/52 (80%)

Query: 1   LEDAQRQLETSNKEQEALIDIFSEERGRRDLEEENLRGKLKDASSTIQDLLE 52
           +E  + +L+  +KEQ +LID+F+E+R RRD EEENLR KL++AS+TIQ L++
Sbjct: 762 VETLKNKLKEMDKEQASLIDVFAEDRDRRDKEEENLRIKLEEASNTIQKLID 813



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.308    0.128    0.322 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,169,420
Number of extensions: 39980
Number of successful extensions: 264
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 264
Number of HSP's successfully gapped: 3
Length of query: 63
Length of database: 11,106,569
Length adjustment: 36
Effective length of query: 27
Effective length of database: 10,119,593
Effective search space: 273229011
Effective search space used: 273229011
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 104 (44.7 bits)