BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0310100 Os04g0310100|Os04g0310100
(203 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0310100 427 e-120
Os04g0308401 Conserved hypothetical protein 427 e-120
Os04g0308300 Conserved hypothetical protein 145 2e-35
Os04g0310000 Conserved hypothetical protein 135 2e-32
Os04g0308500 Conserved hypothetical protein 135 2e-32
>Os04g0310100
Length = 203
Score = 427 bits (1099), Expect = e-120, Method: Compositional matrix adjust.
Identities = 203/203 (100%), Positives = 203/203 (100%)
Query: 1 MSRYAGKSISQVDRAREAMRLIHAEGKNLDALQHALGLKASYGDGVSAMVLVYNATGAAL 60
MSRYAGKSISQVDRAREAMRLIHAEGKNLDALQHALGLKASYGDGVSAMVLVYNATGAAL
Sbjct: 1 MSRYAGKSISQVDRAREAMRLIHAEGKNLDALQHALGLKASYGDGVSAMVLVYNATGAAL 60
Query: 61 ELVDGEGGSMDWYGYVYHEQPPASFQNGQWLAFLHAHPTAQSIGCEAARVFRGRDVDGQV 120
ELVDGEGGSMDWYGYVYHEQPPASFQNGQWLAFLHAHPTAQSIGCEAARVFRGRDVDGQV
Sbjct: 61 ELVDGEGGSMDWYGYVYHEQPPASFQNGQWLAFLHAHPTAQSIGCEAARVFRGRDVDGQV 120
Query: 121 RDFMVAWSLPWSATQNSAYTEVREKDHFPNYWGYIKEEKLEKAGKICTDQTDKNCASTVS 180
RDFMVAWSLPWSATQNSAYTEVREKDHFPNYWGYIKEEKLEKAGKICTDQTDKNCASTVS
Sbjct: 121 RDFMVAWSLPWSATQNSAYTEVREKDHFPNYWGYIKEEKLEKAGKICTDQTDKNCASTVS 180
Query: 181 VGGCTSSEFIAVLQHKFGPLPEE 203
VGGCTSSEFIAVLQHKFGPLPEE
Sbjct: 181 VGGCTSSEFIAVLQHKFGPLPEE 203
>Os04g0308401 Conserved hypothetical protein
Length = 203
Score = 427 bits (1099), Expect = e-120, Method: Compositional matrix adjust.
Identities = 203/203 (100%), Positives = 203/203 (100%)
Query: 1 MSRYAGKSISQVDRAREAMRLIHAEGKNLDALQHALGLKASYGDGVSAMVLVYNATGAAL 60
MSRYAGKSISQVDRAREAMRLIHAEGKNLDALQHALGLKASYGDGVSAMVLVYNATGAAL
Sbjct: 1 MSRYAGKSISQVDRAREAMRLIHAEGKNLDALQHALGLKASYGDGVSAMVLVYNATGAAL 60
Query: 61 ELVDGEGGSMDWYGYVYHEQPPASFQNGQWLAFLHAHPTAQSIGCEAARVFRGRDVDGQV 120
ELVDGEGGSMDWYGYVYHEQPPASFQNGQWLAFLHAHPTAQSIGCEAARVFRGRDVDGQV
Sbjct: 61 ELVDGEGGSMDWYGYVYHEQPPASFQNGQWLAFLHAHPTAQSIGCEAARVFRGRDVDGQV 120
Query: 121 RDFMVAWSLPWSATQNSAYTEVREKDHFPNYWGYIKEEKLEKAGKICTDQTDKNCASTVS 180
RDFMVAWSLPWSATQNSAYTEVREKDHFPNYWGYIKEEKLEKAGKICTDQTDKNCASTVS
Sbjct: 121 RDFMVAWSLPWSATQNSAYTEVREKDHFPNYWGYIKEEKLEKAGKICTDQTDKNCASTVS 180
Query: 181 VGGCTSSEFIAVLQHKFGPLPEE 203
VGGCTSSEFIAVLQHKFGPLPEE
Sbjct: 181 VGGCTSSEFIAVLQHKFGPLPEE 203
>Os04g0308300 Conserved hypothetical protein
Length = 144
Score = 145 bits (365), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 67/68 (98%), Positives = 68/68 (100%)
Query: 136 NSAYTEVREKDHFPNYWGYIKEEKLEKAGKICTDQTDKNCASTVSVGGCTSSEFIAVLQH 195
+SAYTEVREKDHFPNYWGYIKEEKLEKAGKICTDQTDKNCASTVSVGGCTSSEFIAVLQH
Sbjct: 77 SSAYTEVREKDHFPNYWGYIKEEKLEKAGKICTDQTDKNCASTVSVGGCTSSEFIAVLQH 136
Query: 196 KFGPLPEE 203
KFGPLPEE
Sbjct: 137 KFGPLPEE 144
>Os04g0310000 Conserved hypothetical protein
Length = 246
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 97/173 (56%), Gaps = 6/173 (3%)
Query: 1 MSRYAGKSISQVDRAREAMRLIHAEGKNLDALQHALGLKASYGDGVSAMVLVYNATGAAL 60
M RY GK+ Q DRAREAM L++ +GK+ A + G+K YG+G S + LVYNATGA L
Sbjct: 17 MERYVGKAKRQEDRAREAMNLVNEDGKDKKAASYVQGVKDWYGNGESTLCLVYNATGATL 76
Query: 61 ELVDGEGGSMDWYGYVYHEQPPASFQNGQWLAFLHAHPTAQSIGCEAARVFRGRDVDGQV 120
V DW+G++ P NGQW AF H H + S G EAA V+RG + DG
Sbjct: 77 RHV----ADHDWWGFIGRTPYPTEIGNGQWAAFHHVHKSGDSSGSEAAVVYRGTNADGVE 132
Query: 121 RDFMVAWSLPWSA-TQNSAYTEVREKDHFPNYWGYIKEEKLEKAGKICTDQTD 172
RD +VAWS PWS+ +N AY V D F W + +K+ A C +D
Sbjct: 133 RDLLVAWSTPWSSFYRNKAYCAVGGVDSFQGDWEQLY-DKVNNAAYTCNADSD 184
>Os04g0308500 Conserved hypothetical protein
Length = 210
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 97/173 (56%), Gaps = 6/173 (3%)
Query: 1 MSRYAGKSISQVDRAREAMRLIHAEGKNLDALQHALGLKASYGDGVSAMVLVYNATGAAL 60
M RY GK+ Q DRAREAM L++ +GK+ A + G+K YG+G S + LVYNATGA L
Sbjct: 17 MERYVGKAKRQEDRAREAMNLVNEDGKDKKAASYVQGVKDWYGNGESTLCLVYNATGATL 76
Query: 61 ELVDGEGGSMDWYGYVYHEQPPASFQNGQWLAFLHAHPTAQSIGCEAARVFRGRDVDGQV 120
V DW+G++ P NGQW AF H H + S G EAA V+RG + DG
Sbjct: 77 RHV----ADHDWWGFIGRTPYPTEIGNGQWAAFHHVHKSGDSSGSEAAVVYRGTNADGVE 132
Query: 121 RDFMVAWSLPWSA-TQNSAYTEVREKDHFPNYWGYIKEEKLEKAGKICTDQTD 172
RD +VAWS PWS+ +N AY V D F W + +K+ A C +D
Sbjct: 133 RDLLVAWSTPWSSFYRNKAYCAVGGVDSFQGDWEQLY-DKVNNAAYTCNADSD 184
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.132 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,651,184
Number of extensions: 323119
Number of successful extensions: 705
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 703
Number of HSP's successfully gapped: 5
Length of query: 203
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 107
Effective length of database: 12,023,257
Effective search space: 1286488499
Effective search space used: 1286488499
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)