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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0310100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.16 (0.049) R2 : 0.00216
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.103 (0.103) R2dN8 : 0.00279 R2N8 : 0.00216
σ : 0.924
deviance : 391.47
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
371.43 0.906 3.23 -0.0872 0.167 -1.06 -1.15 -2.86 -0.194 7.79 5.055 4408 -- --
375.41 0.902 3.16 -0.081 0.195 -0.683 -1.13 -- -0.13 7.89 5.516 4614 -- --
374.76 0.902 3.24 -0.0773 0.171 -1.04 -- -2.82 -0.219 9.47 5.047 4407 -- --
378.49 0.906 3.17 -0.122 0.222 -0.675 -- -- -0.134 9.56 5.7 4597 -- --
376.8 0.904 3.23 -0.098 -- -1.02 -- -2.78 -0.194 -- 5.046 4407 -- --
382.68 0.917 3.17 -0.323 0.187 -- -1.11 -- -0.145 7.92 -- -- -- --
385.09 0.919 3.17 -0.347 0.226 -- -- -- -0.141 10.5 -- -- -- --
380.9 0.909 3.16 -0.112 -- -0.69 -- -- -0.102 -- 5.505 4407 -- --
378.78 0.906 3.17 -- 0.22 -0.69 -- -- -0.13 9.65 5.6 4597 -- --
388.21 0.921 3.17 -0.351 -- -- -- -- -0.141 -- -- -- -- --
388.27 0.922 3.16 -- 0.228 -- -- -- -0.102 10.6 -- -- -- --
381.18 0.909 3.16 -- -- -0.742 -- -- -0.101 -- 5.585 4407 -- --
391.47 0.924 3.16 -- -- -- -- -- -0.103 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 361.07 wind 7.0 30 > th dose independent rect. 17 1
3 363.08 temperature 30.0 10 < th dose independent rect. 13 20
5 364.21 wind 1.0 270 < th dose independent rect. 4 1
6 364.41 precipitation 0.1 10 < th dose independent rect. 13 20
7 364.41 precipitation 0.1 10 < th dose dependent rect. 13 20
8 364.65 wind 1.0 10 > th dose independent rect. 9 4
9 364.68 atmosphere 995.0 30 > th dose independent rect. 13 20
11 364.75 temperature 30.0 30 < th dose independent rect. 9 4
12 364.75 radiation 1.0 10 > th dose independent rect. 9 4
14 364.85 wind 5.0 4320 > th dose independent rect. 20 6
19 365.00 temperature 30.0 270 < th dose dependent rect. 8 1
21 365.14 wind 5.0 4320 < th dose independent rect. 20 6
24 365.17 wind 1.0 30 > th dose independent rect. 13 20
27 365.23 atmosphere 995.0 270 > th dose independent rect. 10 22
28 365.25 wind 9.0 10 < th dose independent rect. 13 20
29 365.27 temperature 10.0 30 > th dose independent rect. 9 4
31 365.27 temperature 10.0 1440 > th dose independent rect. 10 4
34 365.27 atmosphere 995.0 30 > th dose independent rect. 9 4
35 365.27 atmosphere 995.0 1440 > th dose independent rect. 10 4
36 365.27 atmosphere 1015.0 30 < th dose independent rect. 9 4
37 365.27 precipitation 0.1 30 < th dose independent rect. 9 4
38 365.27 temperature 10.0 30 > th dose independent rect. 13 20
39 365.27 temperature 10.0 1440 > th dose independent rect. 14 20
42 365.27 precipitation 0.1 30 < th dose dependent rect. 9 4
52 365.35 wind 7.0 30 > th dose dependent rect. 17 1
55 365.44 temperature 25.0 90 < th dose dependent rect. 16 1
58 365.52 atmosphere 1005.0 30 > th dose dependent rect. 17 1
59 365.54 wind 1.0 270 < th dose dependent rect. 4 3
60 365.54 atmosphere 1005.0 90 > th dose dependent rect. 16 3
64 365.64 humidity 50.0 270 > th dose dependent rect. 8 1
65 365.69 radiation 10.0 10 > th dose independent sin 12 NA
68 365.74 wind 5.0 4320 > th dose dependent rect. 21 4
72 365.83 radiation 10.0 10 > th dose independent rect. 13 20
73 365.88 wind 1.0 270 < th dose dependent rect. 4 1
80 365.99 atmosphere 1000.0 270 > th dose independent rect. 8 2
83 366.01 wind 9.0 270 < th dose independent rect. 10 22
84 366.05 atmosphere 995.0 30 > th dose dependent rect. 13 20
91 366.11 temperature 30.0 270 < th dose dependent rect. 12 19
94 366.13 atmosphere 1000.0 10 < th dose independent rect. 6 2
96 366.15 atmosphere 1000.0 10 < th dose dependent rect. 6 2
105 366.21 temperature 30.0 270 < th dose independent rect. 11 21
115 366.29 wind 9.0 30 < th dose independent rect. 9 4
119 366.31 wind 3.0 4320 > th dose dependent rect. 24 1
131 366.35 temperature 10.0 270 > th dose independent rect. 10 22
133 366.37 atmosphere 1000.0 90 < th dose independent rect. 6 1
137 366.37 atmosphere 1000.0 90 < th dose dependent rect. 6 1
156 366.47 humidity 50.0 270 > th dose independent rect. 8 2
195 366.60 wind 9.0 270 < th dose independent rect. 8 2
201 366.63 wind 3.0 270 < th dose dependent rect. 2 5
221 366.73 radiation 10.0 10 > th dose independent rect. 16 17
243 366.82 wind 3.0 10 < th dose independent rect. 6 3
256 366.85 humidity 50.0 10 < th dose dependent rect. 14 4
268 366.85 radiation 10.0 10 > th dose dependent rect. 17 14
290 366.96 humidity 70.0 270 > th dose independent rect. 8 1
303 367.03 atmosphere 995.0 14400 > th dose independent rect. 10 4
348 367.34 wind 5.0 4320 < th dose independent rect. 20 1
352 367.37 atmosphere 1005.0 270 > th dose dependent rect. 14 6
353 367.38 precipitation 0.1 270 < th dose independent rect. 10 22
354 367.38 precipitation 0.1 270 < th dose dependent rect. 10 22
372 367.49 humidity 50.0 10 > th dose independent rect. 13 20
384 367.59 radiation 10.0 10 < th dose independent sin 12 NA
387 367.61 humidity 50.0 10 < th dose independent rect. 14 4
411 367.65 humidity 80.0 10 < th dose dependent rect. 22 1
416 367.67 atmosphere 1005.0 30 > th dose dependent rect. 17 6
429 367.73 wind 5.0 10 < th dose dependent rect. 6 3
435 367.75 wind 1.0 1440 < th dose dependent rect. 4 3
450 367.85 wind 3.0 4320 > th dose dependent rect. 17 10
452 367.86 atmosphere 1000.0 90 > th dose dependent rect. 13 10
468 367.91 radiation 40.0 30 < th dose independent rect. 12 21
476 367.96 wind 3.0 4320 > th dose dependent rect. 20 1
482 367.98 wind 7.0 4320 > th dose dependent rect. 21 1
483 368.02 atmosphere 995.0 30 > th dose dependent rect. 9 4
497 368.12 wind 5.0 4320 > th dose independent rect. 9 1
505 368.16 temperature 30.0 90 < th dose dependent rect. 12 21
507 368.17 temperature 20.0 720 > th dose dependent rect. 17 1
540 368.22 wind 5.0 10 > th dose independent rect. 20 2
552 368.26 wind 3.0 1440 < th dose independent rect. 24 6
553 368.26 wind 5.0 4320 > th dose dependent rect. 9 1
556 368.27 atmosphere 1010.0 720 < th dose dependent rect. 17 1
577 368.42 temperature 10.0 720 > th dose dependent rect. 15 5
579 368.44 wind 5.0 4320 > th dose independent rect. 20 1
580 368.44 humidity 50.0 30 > th dose independent rect. 9 4
591 368.49 radiation 20.0 10 < th dose dependent sin 12 NA
593 368.51 atmosphere 1015.0 30 < th dose independent rect. 13 20
598 368.52 atmosphere 995.0 270 > th dose dependent rect. 8 2
600 368.53 wind 5.0 10 > th dose dependent rect. 21 1
602 368.54 wind 1.0 270 < th dose independent rect. 4 3
614 368.59 wind 7.0 90 > th dose independent rect. 17 16
615 368.60 wind 5.0 4320 < th dose independent rect. 9 1
629 368.70 wind 3.0 1440 > th dose independent rect. 24 6
635 368.72 humidity 50.0 30 < th dose dependent sin 12 NA
638 368.75 wind 5.0 4320 < th dose independent rect. 24 1
642 368.76 wind 1.0 1440 < th dose dependent rect. 6 1
652 368.84 temperature 20.0 720 > th dose dependent rect. 16 3
654 368.86 atmosphere 1005.0 720 < th dose independent rect. 17 1
657 368.87 wind 5.0 90 < th dose independent rect. 17 12
670 368.91 radiation 1.0 10 > th dose dependent rect. 13 20
691 368.96 temperature 30.0 90 < th dose independent rect. 9 14
697 368.99 wind 5.0 4320 < th dose independent sin 12 NA
702 369.01 wind 5.0 4320 < th dose independent rect. 16 21
706 369.03 humidity 80.0 10 < th dose independent rect. 21 1
713 369.06 wind 3.0 1440 > th dose independent rect. 24 1
714 369.07 temperature 30.0 90 < th dose independent rect. 21 15
745 369.12 wind 5.0 4320 > th dose independent sin 12 NA
751 369.13 wind 1.0 90 > th dose independent rect. 3 10
763 369.17 temperature 15.0 10 > th dose independent rect. 22 15
766 369.19 temperature 10.0 270 > th dose dependent rect. 17 10
768 369.20 wind 5.0 4320 > th dose independent rect. 16 21
781 369.22 wind 5.0 4320 > th dose independent rect. 19 18
787 369.23 temperature 15.0 10 > th dose independent rect. 9 15
788 369.24 wind 5.0 4320 > th dose independent rect. 19 20
794 369.26 wind 7.0 90 > th dose independent rect. 17 8
800 369.29 atmosphere 995.0 90 > th dose independent rect. 12 9
804 369.30 wind 5.0 4320 < th dose independent rect. 19 18
810 369.32 wind 5.0 4320 < th dose independent rect. 19 20
817 369.36 wind 7.0 4320 > th dose independent rect. 23 3
828 369.38 atmosphere 1010.0 90 < th dose independent rect. 12 9
830 369.39 humidity 50.0 90 > th dose independent rect. 9 20
833 369.39 temperature 10.0 90 > th dose dependent rect. 17 12
855 369.47 temperature 10.0 90 > th dose independent rect. 12 9
860 369.47 atmosphere 995.0 90 > th dose independent rect. 21 15
865 369.48 atmosphere 1000.0 43200 < th dose dependent rect. 7 1
866 369.49 humidity 50.0 30 < th dose independent sin 12 NA
891 369.54 temperature 10.0 10 > th dose dependent rect. 24 9
897 369.56 wind 1.0 270 > th dose dependent rect. 2 8
898 369.58 wind 7.0 90 > th dose independent rect. 17 12
902 369.58 wind 1.0 270 > th dose dependent rect. 8 1
904 369.59 humidity 50.0 90 < th dose independent rect. 13 3
920 369.66 wind 9.0 90 < th dose independent rect. 12 9
932 369.70 radiation 40.0 10 < th dose dependent sin 12 NA
940 369.71 atmosphere 1015.0 10 < th dose dependent rect. 6 3
958 369.75 wind 5.0 1440 < th dose dependent rect. 24 6
959 369.75 wind 9.0 1440 < th dose dependent rect. 24 6
966 369.78 temperature 30.0 4320 < th dose independent rect. 13 1