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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0308500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.1 (0.0454) R2 : 0.0895
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.68 (0.859) R2dE : 0.0874 R2E : 0.0875
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0829 (0.0956) R2dN8 : 0.00193 R2N8 : 0.00208
σ : 0.853
deviance : 335.45
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 9.34
memory length : 26
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 10.6
open length of G : 1.01

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
325.59 0.848 3.09 0.00495 0.0369 1.37 0.666 10.8 -0.0793 6.51 10.22 34 10 1.61
336.74 0.855 3.11 0.0213 0.019 4.74 -0.629 -- -0.131 20.1 10.05 30 10.6 1.23
326.61 0.842 3.09 0.0175 0.0398 1.37 -- 11.1 -0.0775 6.82 9.999 33 10 1.61
336.71 0.855 3.09 -0.0194 0.0809 5.54 -- -- -0.107 7.72 9.127 27 10.6 1.15
326.7 0.842 3.09 0.0174 -- 1.36 -- 11 -0.08 -- 10 33 10 1.62
364.58 0.895 3.1 0.0411 0.113 -- 0.786 -- -0.0924 9.28 -- -- -- --
366.65 0.897 3.1 0.0716 0.117 -- -- -- -0.0902 11 -- -- -- --
335.45 0.853 3.1 -0.0133 -- 5.68 -- -- -0.0859 -- 9.34 26 10.6 1.01
336.59 0.854 3.09 -- 0.072 5.44 -- -- -0.0927 8 9.059 27 10.6 1.19
367.5 0.896 3.1 0.069 -- -- -- -- -0.0911 -- -- -- -- --
366.78 0.896 3.1 -- 0.116 -- -- -- -0.0981 11 -- -- -- --
335.45 0.853 3.1 -- -- 5.68 -- -- -0.0829 -- 9.34 26 10.6 1.01
367.62 0.895 3.1 -- -- -- -- -- -0.0987 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 331.58 radiation 10 30 < th dose independent rect. 10 2
5 331.76 radiation 10 30 < th dose dependent rect. 10 2
27 335.79 radiation 10 30 < th dose independent rect. 8 5
33 337.55 wind 5 90 > th dose independent rect. 5 2
34 337.57 wind 5 90 > th dose dependent rect. 5 2
36 337.89 radiation 10 30 < th dose dependent rect. 8 5
52 340.61 temperature 30 14400 < th dose dependent rect. 12 1
55 340.83 wind 1 30 < th dose dependent rect. 8 20
57 340.95 temperature 25 14400 < th dose dependent rect. 6 7
60 341.01 temperature 20 14400 > th dose independent sin 23 NA
63 341.07 temperature 20 14400 < th dose independent sin 22 NA
91 341.44 temperature 20 14400 > th dose independent rect. 6 14
103 341.52 temperature 20 14400 > th dose independent rect. 7 20
108 341.54 temperature 25 14400 < th dose dependent sin 0 NA
112 341.57 temperature 20 14400 < th dose independent rect. 6 15
113 341.58 temperature 20 14400 < th dose independent rect. 6 18
143 341.72 temperature 25 14400 < th dose independent rect. 9 2
146 341.73 temperature 25 14400 < th dose dependent rect. 7 1
150 341.75 temperature 25 14400 < th dose independent rect. 9 4
153 341.75 temperature 20 14400 < th dose independent rect. 7 21
169 341.78 temperature 20 14400 > th dose independent rect. 2 20
183 341.81 temperature 25 14400 > th dose independent rect. 9 3
187 341.82 temperature 20 14400 > th dose independent rect. 9 11
256 341.97 humidity 90 14400 > th dose independent rect. 21 6
272 342.01 temperature 20 14400 < th dose independent rect. 9 11
277 342.01 temperature 20 14400 < th dose dependent rect. 19 4
290 342.05 temperature 25 14400 < th dose independent rect. 9 8
335 342.13 temperature 20 14400 > th dose independent rect. 19 23
337 342.13 temperature 20 14400 < th dose dependent rect. 20 1
355 342.16 temperature 25 14400 > th dose independent rect. 9 8
365 342.18 temperature 20 14400 > th dose independent no NA NA
375 342.19 temperature 20 14400 > th dose independent rect. 14 23
462 342.31 temperature 25 14400 > th dose independent rect. 16 1
476 342.34 temperature 25 14400 < th dose independent rect. 12 1
509 342.38 atmosphere 1010 1440 > th dose dependent rect. 13 1
528 342.41 temperature 20 14400 < th dose independent no NA NA
537 342.42 temperature 20 14400 < th dose independent rect. 19 23
538 342.42 temperature 20 14400 < th dose independent rect. 21 23
539 342.42 temperature 15 14400 > th dose dependent rect. 12 1
548 342.43 temperature 20 14400 < th dose independent rect. 14 23
594 342.48 temperature 20 14400 > th dose independent rect. 2 1
605 342.49 temperature 25 14400 < th dose independent rect. 16 1
606 342.49 temperature 20 14400 > th dose independent rect. 5 8
663 342.54 humidity 90 14400 > th dose dependent rect. 9 6
694 342.59 temperature 20 14400 < th dose independent rect. 6 6
717 342.61 temperature 30 14400 < th dose dependent rect. 14 1
857 342.75 humidity 90 14400 < th dose independent rect. 20 7
892 342.78 temperature 25 14400 < th dose dependent no NA NA
946 342.83 temperature 25 14400 < th dose dependent rect. 14 23
997 342.87 wind 1 30 < th dose dependent rect. 13 15