BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0290400 Os04g0290400|AK107207
         (81 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0290400  Conserved hypothetical protein                      138   8e-34
Os01g0719200  Conserved hypothetical protein                       94   2e-20

>Os04g0290400 Conserved hypothetical protein
          Length = 81

 Score =  138 bits (348), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 69/81 (85%), Positives = 69/81 (85%)

Query: 1  MRGAGCGCLPQFQTAAXXXXXXXXXXXXWGISELGLSLVNHPHMPTLTRNEPNGPTIEWR 60
          MRGAGCGCLPQFQTAA            WGISELGLSLVNHPHMPTLTRNEPNGPTIEWR
Sbjct: 1  MRGAGCGCLPQFQTAAPSSPHRPPRRRRWGISELGLSLVNHPHMPTLTRNEPNGPTIEWR 60

Query: 61 VAQQRVPCLRPSPDAAPRLCT 81
          VAQQRVPCLRPSPDAAPRLCT
Sbjct: 61 VAQQRVPCLRPSPDAAPRLCT 81



>Os01g0719200 Conserved hypothetical protein
          Length = 77

 Score = 94.0 bits (232), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/52 (88%), Positives = 48/52 (92%)

Query: 29 WGISELGLSLVNHPHMPTLTRNEPNGPTIEWRVAQQRVPCLRPSPDAAPRLC 80
          WGIS LGLSLVNHPHMPTLT+NEPNGPTI+WRVAQQRV CL PSPDAA RLC
Sbjct: 25 WGISGLGLSLVNHPHMPTLTQNEPNGPTIQWRVAQQRVLCLCPSPDAALRLC 76



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.137    0.473 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,791,392
Number of extensions: 83014
Number of successful extensions: 211
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 2
Length of query: 81
Length of database: 17,035,801
Length adjustment: 51
Effective length of query: 30
Effective length of database: 14,372,887
Effective search space: 431186610
Effective search space used: 431186610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)