Os01g0719200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0719200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.34 | 0.337 | 7.32 | -1.29 | 0.604 | 1.33 | -0.17 | 0.383 | -0.706 | 17.3 | 20.46 | 15 | -- | -- |
| 51.28 | 0.334 | 7.32 | -1.34 | 0.609 | 1.3 | -0.144 | -- | -0.703 | 17.1 | 21.4 | 14 | -- | -- |
| 51.21 | 0.333 | 7.32 | -1.32 | 0.595 | 1.32 | -- | 0.186 | -0.709 | 17.2 | 21.4 | 14 | -- | -- |
| 51.24 | 0.333 | 7.33 | -1.34 | 0.598 | 1.32 | -- | -- | -0.716 | 17.2 | 21.4 | 14 | -- | -- |
| 64.63 | 0.374 | 7.33 | -1.48 | -- | 1.72 | -- | -0.251 | -0.795 | -- | 21.62 | 84 | -- | -- |
| 78.06 | 0.414 | 7.28 | -1.08 | 1.03 | -- | 0.448 | -- | -0.496 | 16 | -- | -- | -- | -- |
| 78.63 | 0.415 | 7.28 | -1.07 | 1.04 | -- | -- | -- | -0.494 | 16 | -- | -- | -- | -- |
| 64.67 | 0.375 | 7.33 | -1.45 | -- | 1.69 | -- | -- | -0.786 | -- | 21.67 | 84 | -- | -- |
| 95.37 | 0.457 | 7.28 | -- | 0.755 | 0.891 | -- | -- | -0.5 | 16.7 | 21.8 | 16 | -- | -- |
| 137.23 | 0.547 | 7.27 | -1.11 | -- | -- | -- | -- | -0.521 | -- | -- | -- | -- | -- |
| 108.79 | 0.488 | 7.25 | -- | 1.06 | -- | -- | -- | -0.375 | 16 | -- | -- | -- | -- |
| 116.3 | 0.502 | 7.27 | -- | -- | 1.44 | -- | -- | -0.532 | -- | 23.86 | 42 | -- | -- |
| 169.84 | 0.608 | 7.24 | -- | -- | -- | -- | -- | -0.398 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.05 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 2 | 51.33 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 3 | 51.46 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 6 | 51.59 | temperature | 20 | 90 | > th | dose dependent | rect. | 5 | 18 |
| 7 | 51.66 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 17 |
| 15 | 52.02 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 21 | 52.45 | temperature | 20 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 25 | 52.49 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 54 | 53.04 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 62 | 53.20 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 63 | 53.21 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 74 | 53.42 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 15 |
| 80 | 53.50 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 82 | 53.52 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 90 | 53.59 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 91 | 53.60 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 102 | 53.73 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 115 | 53.91 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 126 | 53.98 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 130 | 53.99 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 147 | 54.24 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 179 | 54.71 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 192 | 54.96 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 193 | 55.02 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 195 | 55.04 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 198 | 55.08 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 201 | 55.13 | temperature | 25 | 270 | > th | dose independent | rect. | 3 | 19 |
| 220 | 55.25 | temperature | 20 | 10 | > th | dose dependent | sin | 0 | NA |
| 246 | 55.38 | temperature | 30 | 30 | < th | dose dependent | sin | 23 | NA |
| 438 | 56.70 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 498 | 57.06 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 14 |
| 571 | 57.37 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 17 |
| 585 | 57.44 | temperature | 15 | 720 | > th | dose dependent | sin | 4 | NA |
| 601 | 57.50 | temperature | 30 | 720 | < th | dose dependent | sin | 2 | NA |
| 604 | 57.50 | temperature | 20 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 643 | 57.65 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 21 |
| 646 | 57.65 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 15 |
| 650 | 57.67 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 695 | 57.82 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 19 |
| 783 | 58.11 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 22 |
| 940 | 58.55 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 8 |
| 975 | 58.64 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 16 |