BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0267600 Os04g0267600|AK071614
(407 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0267600 Cyclin-like F-box domain containing protein 822 0.0
Os04g0267000 Cyclin-like F-box domain containing protein 497 e-141
Os04g0267700 129 3e-30
Os04g0268600 115 5e-26
Os11g0642600 90 4e-18
Os11g0538300 85 1e-16
AK103754 67 2e-11
>Os04g0267600 Cyclin-like F-box domain containing protein
Length = 407
Score = 822 bits (2122), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/407 (98%), Positives = 399/407 (98%)
Query: 1 MTEPRSNTAKTMTIMQRRDRLSDLPDATLARVLYHLGSVNATVTSALSRRWRNVHAAVPV 60
MTEPRSNTAKTMTIMQRRDRLSDLPDATLARVLYHLGSVNATVTSALSRRWRNVHAAVPV
Sbjct: 1 MTEPRSNTAKTMTIMQRRDRLSDLPDATLARVLYHLGSVNATVTSALSRRWRNVHAAVPV 60
Query: 61 VDLVDPKKGERWGNVSGQKTCFDHQVTAAILGKDLPTRKFRLDAFYPPYDLRDQWFAIVS 120
VDLVDPKKGERWGNVSGQKTCFDHQVTAAILGKDLPTRKFRLDAFYPPYDLRDQWFAIVS
Sbjct: 61 VDLVDPKKGERWGNVSGQKTCFDHQVTAAILGKDLPTRKFRLDAFYPPYDLRDQWFAIVS 120
Query: 121 VSGLEEFDVKLRYWDHSRRNLCPFGTHPKASADFDEEMRHSFTATPPHIFRCDXXXXXXX 180
VSGLEEFDVKLRYWDHSRRNLCPFGTHPKASADFDEEMRHSFTATPPHIFRCD
Sbjct: 121 VSGLEEFDVKLRYWDHSRRNLCPFGTHPKASADFDEEMRHSFTATPPHIFRCDTLRRLLL 180
Query: 181 XNWTLDVPAGGVSMPSLETLFLKRIMAEDGAVQRLISGCPNIADLTLEQCPSVKRLVVAS 240
NWTLDVPAGGVSMPSLETLFLKRIMAEDGAVQRLISGCPNIADLTLEQCPSVKRLVVAS
Sbjct: 181 TNWTLDVPAGGVSMPSLETLFLKRIMAEDGAVQRLISGCPNIADLTLEQCPSVKRLVVAS 240
Query: 241 PRLDSFAMICCHHASHVVLQAERLRTLRYKGGLPGENFFSIANCGDVLAMTIDICESLLG 300
PRLDSFAMICCHHASHVVLQAERLRTLRYKGGLPGENFFSIANCGDVLAMTIDICESLLG
Sbjct: 241 PRLDSFAMICCHHASHVVLQAERLRTLRYKGGLPGENFFSIANCGDVLAMTIDICESLLG 300
Query: 301 KSASAVVPITKVITRCTNVTFLHLHLRPTMAFHSGTFTRALRHLPHLRQLALKGLLDNDE 360
KSASAVVPITKVITRCTNVTFLHLHLRPTMAFHSGTFTRALRHLPHLRQLALKGLLDNDE
Sbjct: 301 KSASAVVPITKVITRCTNVTFLHLHLRPTMAFHSGTFTRALRHLPHLRQLALKGLLDNDE 360
Query: 361 TALSVSTLLRNTPNLDVLSLIPLRPRPPKPDYLYMFDGSDDDSSQNG 407
TALSVSTLLRNTPNLDVLSLIPLRPRPPKPDYLYMFDGSDDDSSQNG
Sbjct: 361 TALSVSTLLRNTPNLDVLSLIPLRPRPPKPDYLYMFDGSDDDSSQNG 407
>Os04g0267000 Cyclin-like F-box domain containing protein
Length = 485
Score = 497 bits (1280), Expect = e-141, Method: Compositional matrix adjust.
Identities = 258/387 (66%), Positives = 293/387 (75%), Gaps = 19/387 (4%)
Query: 11 TMTIMQRRDRLSDLPDATLARVLYHLGSVNATVTSALSRRWRNVHAAVPVVDLVDPKKGE 70
T T R DRLS LPD L RVL HLGSV+A T+ALS RWR++HAAVPVVDLVDP+
Sbjct: 3 TTTGRHRHDRLSALPDGILVRVLSHLGSVDAASTAALSHRWRHIHAAVPVVDLVDPESD- 61
Query: 71 RWGNVSGQKTCFDHQVTAAILGKD--LPTRKFRLDAFYPPYDLRDQWFAIVSVSGLEEFD 128
Q+++AI+ K+ P R RL +PP+D Q A + +GL+EFD
Sbjct: 62 --------------QISSAIVAKNSAAPIRTLRLVDLWPPHDALHQAVATATAAGLQEFD 107
Query: 129 VKLRYWDHSRRNLCPFGTHPKASADFDEEMRHSFTATPPHIFRCDXXXXXXXXNWTLDVP 188
VKLR+ D S R LCPF HP ASADFD+ MR SFTATPPHIFRCD N+ LDVP
Sbjct: 108 VKLRHGDCSNRKLCPFRRHPDASADFDDSMRGSFTATPPHIFRCDTLRRLRLTNFQLDVP 167
Query: 189 AGGVSMPSLETLFLKRIMAE-DGAVQRLISGCPNIADLTLEQCPSVKRLVVASPRLDSFA 247
GGVSMPSLE L LKRIMA D AVQ+L+SGCPN+ADLTLEQCPSV LVVASPRL+SFA
Sbjct: 168 EGGVSMPSLEILSLKRIMATTDEAVQQLVSGCPNLADLTLEQCPSVADLVVASPRLESFA 227
Query: 248 MICCHHASHVVLQAERLRTLRYKGGLP-GENFFSIANCGDVLAMTIDICESLLGKSASAV 306
MICCH+A+HVVL +RLRTLRYK GLP GENF IA+C +VLAMTIDICESL+GKSA AV
Sbjct: 228 MICCHNAAHVVLHTQRLRTLRYKDGLPAGENFLMIADCTNVLAMTIDICESLVGKSAPAV 287
Query: 307 VPITKVITRCTNVTFLHLHLRPTMAFHSGTFTRALRHLPHLRQLALKGLLDNDETALSVS 366
VPITK+ITRC ++TFLHLHLRP MA+HSG FTRALRH PHLRQLALKGLL +D+T SVS
Sbjct: 288 VPITKLITRCASLTFLHLHLRPAMAYHSGAFTRALRHHPHLRQLALKGLLKDDQTIRSVS 347
Query: 367 TLLRNTPNLDVLSLIPLRPRPPKPDYL 393
TLLRNTP LDVLSL PLR +P KP YL
Sbjct: 348 TLLRNTPELDVLSLFPLRTQPAKPYYL 374
>Os04g0267700
Length = 523
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 123/433 (28%), Positives = 193/433 (44%), Gaps = 65/433 (15%)
Query: 18 RDRLSDLPDATLARVLYHLGSVNATVTSALSRRWRNVHAAVPVVDLVDPKKGER------ 71
RDRLSDLPD L +L L +V A T+ LSRRWR+V V + L + +G+R
Sbjct: 19 RDRLSDLPDELLGHILSFLPNVEAGRTAVLSRRWRDVFGCVDTISL-EEYEGQRSNDWET 77
Query: 72 -WGNVSGQKTCFDH---QVTAAIL------GKDLPTRKFRLDAFYPPYDLRDQWFAI--- 118
+ +K+C H ++AA+L G++LP R+F +D W +
Sbjct: 78 FFYEAEERKSCSGHLLDGLSAALLSRRRCNGRNLPLRRFGF-----AFDSITGWDVVFVD 132
Query: 119 -----VSVSGLEEFDVKLRYWDHSRRNLCPF---GTHPKASADF-----------DEEMR 159
V +E + LR++ +CP G K A D+E
Sbjct: 133 MCLHHVLRHASKELHLDLRFF------ICPICERGGCRKRKAKVKSRRETPEKSDDDEEG 186
Query: 160 HSFTAT-----PPHIFRCDXXXXXXXXNWTLDVPAGGVSMPSLETLFLKRIMAEDGAVQR 214
H ++ P ++ C L+VP +++P LET+ L +QR
Sbjct: 187 HLYSTRCGYILPRKLYSCVALKTLCVSYAWLNVPES-INLPLLETMRLTGPGNSGRDIQR 245
Query: 215 LISGCPNIADLTLEQCPSVKRLVVASPRLDSFAMICCHHASHVVLQAERLRTLRYKGGLP 274
LISGCP + DL +E P+++ L + RL SFA+ CC + V + + L TL Y G +
Sbjct: 246 LISGCPRLTDLKIEGAPNLRTLCILDKRLRSFALRCCQNVKSVPIDSTELTTLAYSGAVQ 305
Query: 275 GENFFSIANCGDVLAMTIDICESLLGKSASAVVPITKVITRCTNVTFLHLH-LRPTMAFH 333
E+ S+ G V ++ + LG+ + + + + T LH+ R +
Sbjct: 306 PESLLSLH--GGVQRIS-SCTQKPLGEE---IGRLGRFLDLFAGTTHLHVESARMGASME 359
Query: 334 SGTFTRALRHLPHLRQLALKGLLDNDETALSVSTLLRNTPNLDVLSLIPLRPRPPKPDYL 393
S FT +L L +L L G L +D A +V +L TP L+ L+L L P P +PDY
Sbjct: 360 SKHFTSSL-TFAGLTRLDLTGCLPSDGAANAVRRILEQTPKLECLTLF-LVPVPKEPDYG 417
Query: 394 YMFDGSDDDSSQN 406
Y + ++D +
Sbjct: 418 YYYGLQEEDVDEK 430
>Os04g0268600
Length = 534
Score = 115 bits (289), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 112/409 (27%), Positives = 171/409 (41%), Gaps = 64/409 (15%)
Query: 19 DRLSDLPDATLARVLYHLGSVNATVTSALSRRWRNVHAAVPVVDL--------------- 63
DR+S+LPD L +L L + A T+ LSRRWR + V +
Sbjct: 18 DRISELPDDLLGHILSFLPNNLAARTAVLSRRWRYIFGYVHTISFEEEEGEREDDWITMY 77
Query: 64 --VDPKKGERWGNVSGQKTCFDHQVTAAIL------GKDLPTRKFRLDA-FYPPYD--LR 112
+ KK W + ++ AA+L G+ +P R F Y +D +
Sbjct: 78 FQAEEKKSMSWKLLD--------RMNAALLCRRRCAGRHVPLRSFHFACDSYHVWDRVIV 129
Query: 113 DQWFAIVSVSGLEEFDVKLRYWDHSRRNLCPFGTHPKASADFDEE-----MRHSFTATPP 167
D W V +E + LR+W +C G + S D E RH P
Sbjct: 130 DAWVTYVVCHSSQELHLDLRFWIGP---ICAGGERDRLSTIVDSEPPVFPGRH--YELPR 184
Query: 168 HIFRCDXXXXXXXXNWTLDVPAGGVSMPSLETLFLKRIMAEDGAVQRLISGCPNIADLTL 227
++ C L++ + + L+T+ L I +QRLIS CP +ADLTL
Sbjct: 185 SLYSCVALQTLCLSYCDLNLLES-IDLSLLKTMRLTGIHGSRSRIQRLISSCPRLADLTL 243
Query: 228 EQCPSVKRLVVASPRLDSFAMICCHHASHVVLQAERLRTLRYKGGLPGENFFSIANCGD- 286
E +K L + RL SFA+ CCH+ +V + A L T+ Y+G + + ++++ G
Sbjct: 244 EALRQLKTLSLLDKRLRSFALRCCHNVDNVAIDASELTTIAYRGAVSDDPSYTLSMHGSL 303
Query: 287 -VLAMTIDICESLLGKSASAVVPITKVITRCTNVTFLHLHL---RPTMAFHSGTFTRA-L 341
+ + T+D C L S T HLHL R S F A
Sbjct: 304 AITSCTVDFCSEELITSEEEFDSST------------HLHLKFDRLGSCIDSDLFPAAGF 351
Query: 342 RHLPHLRQLALKGLLDNDETALSVSTLLRNTPNLDVLSLIPLRPRPPKP 390
R +LR+L L G + + A+++ +L TPNL+ L+L L+P P
Sbjct: 352 RTFTNLRRLELTGHVPDCGVAIAMRRILEMTPNLESLTLF-LKPEKCNP 399
>Os11g0642600
Length = 591
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 111/233 (47%), Gaps = 23/233 (9%)
Query: 166 PPHIFRCDXXXXXXXXNWTLDVPAGGVSMPSLETLFLKRIMAEDGAVQRLISGCPNIADL 225
P +F C + +PA V++PS+ETL L + VQRL+SGCP +ADL
Sbjct: 254 PSMLFSCAVLRSLTLGSCGFALPAT-VALPSVETLVLSHVKGPASDVQRLVSGCPRLADL 312
Query: 226 TLEQCPSVKRL-VVASPRLDSFAMICCHHASHVVLQAERLRTLRYKGGLPGENFFSIANC 284
TLE C +V + ++ RL A+ CCH + V + A L T Y+G +P F +
Sbjct: 313 TLEACGAVTAVTILGGARLRRLAIRCCHRLAAVAVDASELHTFEYRGAVPRSRDFLTLHH 372
Query: 285 GD--------VLAMTIDICESLLGKSASAVVPITKV--ITRCTNVTFLHLHLRPTMAFHS 334
GD + +DIC GK A++ +T + + HLHL+ + +
Sbjct: 373 GDADARRRRGIACCHVDIC----GKEATSEEELTGLRRFLQLFADDATHLHLQ-SARLGA 427
Query: 335 GTFTRALRH---LPHLRQLALKGLL---DNDETALSVSTLLRNTPNLDVLSLI 381
G AL P+LR L L G L D +V+T+L +TP L+ LSL+
Sbjct: 428 GADKDALASFPTFPNLRHLELWGSLPDDDAAAAVTTVTTILNSTPGLEALSLV 480
>Os11g0538300
Length = 468
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 81/169 (47%), Gaps = 10/169 (5%)
Query: 164 ATPPHIFRCDXXXXXXXXNWTLDVPAGGVSMPSLETLFLKRIMAEDGAVQRLISGCPNIA 223
A P +F C + L PA +++PSLETL L R+ VQRLISGCP +A
Sbjct: 276 AVPSGLFSCAALRSLSLGHCLLAPPAA-IALPSLETLLLARVSDAGSDVQRLISGCPRLA 334
Query: 224 DLTLEQCPSVKRLVVASPRLDSFAMICCHHASHVVLQAE----RLRTLRYKGGLPGENFF 279
DLTLE C +V L + L A+ CCH V + A RL+ Y+G +P + F
Sbjct: 335 DLTLEACATVTALTTVA-GLRRLALRCCHALRTVAVDASPGPPRLQAFEYRGSVPDDTFL 393
Query: 280 SI---ANCGDVLAMTIDICESLLGKSASAVVPITKVITRCTNVTFLHLH 325
+I A+ V IDIC + S+S + ++ + LHL
Sbjct: 394 TIHGGASLTTVAYCKIDICGEEV-TSSSELAKLSAFLRLFAGAKHLHLE 441
>AK103754
Length = 501
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 115/272 (42%), Gaps = 28/272 (10%)
Query: 3 EPRSNTAKTMTIMQRRDRLSDLPDATLARVLYHLGSVNATVTSALSRRWRNVHAAVPV-- 60
+ RS+ + DRLS L DA+L +LY + +A VT+ALSRRWR V +P
Sbjct: 10 KARSSESSPQAYADDVDRLSALDDASLHAILYCMPLRDAAVTTALSRRWRRVFPTLPCLY 69
Query: 61 VDLVDPKKGERWGNVSGQKTCFDHQVTAAILGKDLPTRKFRLDAFYPPYDL---RDQWF- 116
+D + + G C D L + +R + F D+ + WF
Sbjct: 70 IDSATFNGRDYVADSLGDDYCEDPDRWVEALDCIVGSRAAPVAVFDVEADVMFTEEGWFH 129
Query: 117 AIVSVSGLEEFDVKLRYWDHSRRNLCPFGTHPKASADFDEEMRHSFTATPPHIFRCDXXX 176
++ V +KLR W+ +R C P ++ C+
Sbjct: 130 DVIRVLCRSGGLLKLRIWN-TRLTSCYL--------------------LPSPVYACETLV 168
Query: 177 XXXXXNWTLDVPAGGVSMPSLETLFLKRIMAEDGAVQRLISGCPNIADLTLEQCPSVKRL 236
+ L VP + +L++L L+ ++A DG +QR++S C + L +E + +
Sbjct: 169 SLELFSCRLRVPDRLTGLRALQSLVLQDVVATDGDLQRMLSRCEAMKRLVMEDIRKARNI 228
Query: 237 VVASPRLDSFAMICCHHASHVVLQAERLRTLR 268
V+ +P L+ + I + V ++A +LR R
Sbjct: 229 VIDAPSLE-YLQIHSYRPLRVSVKAPKLRLAR 259
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.136 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,577,164
Number of extensions: 605397
Number of successful extensions: 1814
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1803
Number of HSP's successfully gapped: 8
Length of query: 407
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 304
Effective length of database: 11,657,759
Effective search space: 3543958736
Effective search space used: 3543958736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 157 (65.1 bits)