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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0267000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.11 (0.0233) R2 : 0.0723
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.292 (0.049) R2dN8 : 0.0933 R2N8 : 0.0723
σ : 0.438
deviance : 88.16
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
79.11 0.418 3.11 -0.225 0.13 -0.487 -0.0709 0.179 0.282 2.58 1.1 30 -- --
79.14 0.414 3.11 -0.218 0.133 -0.471 -0.0801 -- 0.283 2.65 1.104 29 -- --
79.13 0.414 3.11 -0.224 0.13 -0.488 -- 0.212 0.282 2.57 1.101 29 -- --
79.16 0.414 3.11 -0.213 0.132 -0.468 -- -- 0.284 2.62 1.11 29 -- --
79.97 0.416 3.11 -0.235 -- -0.57 -- 0.306 0.286 -- 1.198 29 -- --
83.76 0.429 3.11 -0.148 0.265 -- 0.00463 -- 0.27 3.53 -- -- -- --
83.76 0.429 3.11 -0.148 0.265 -- -- -- 0.27 3.53 -- -- -- --
80.04 0.417 3.11 -0.219 -- -0.544 -- -- 0.289 -- 1.142 29 -- --
80.34 0.417 3.11 -- 0.14 -0.426 -- -- 0.302 2.76 1.1 29 -- --
87.67 0.438 3.11 -0.137 -- -- -- -- 0.277 -- -- -- -- --
84.34 0.43 3.11 -- 0.262 -- -- -- 0.286 3.53 -- -- -- --
81.27 0.42 3.1 -- -- -0.511 -- -- 0.312 -- 1.135 29 -- --
88.16 0.438 3.11 -- -- -- -- -- 0.292 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 77.57 wind 1.0 90 < th dose dependent rect. 4 1
2 77.69 wind 1.0 90 < th dose independent rect. 4 1
5 78.23 wind 1.0 90 < th dose independent rect. 1 4
6 78.56 temperature 25.0 720 > th dose dependent rect. 22 1
8 78.68 temperature 20.0 90 > th dose dependent rect. 4 1
12 78.83 wind 1.0 30 > th dose independent sin 7 NA
15 78.87 wind 1.0 30 < th dose independent rect. 2 8
16 78.88 wind 1.0 30 > th dose independent rect. 3 23
24 78.95 temperature 20.0 90 > th dose independent rect. 4 1
36 79.07 wind 1.0 90 < th dose dependent rect. 1 4
48 79.16 temperature 30.0 720 > th dose dependent rect. 18 1
63 79.17 atmosphere 1005.0 90 > th dose independent rect. 4 1
64 79.19 wind 1.0 30 > th dose independent rect. 8 23
65 79.19 wind 1.0 90 < th dose dependent rect. 4 3
81 79.22 wind 7.0 1440 < th dose independent rect. 5 1
83 79.22 temperature 10.0 1440 > th dose independent rect. 5 1
86 79.22 temperature 30.0 1440 < th dose independent rect. 5 1
90 79.22 humidity 50.0 1440 > th dose independent rect. 5 1
99 79.22 atmosphere 995.0 1440 > th dose independent rect. 5 1
100 79.22 atmosphere 1015.0 1440 < th dose independent rect. 5 1
101 79.22 radiation 20.0 1440 < th dose independent rect. 5 1
111 79.22 temperature 10.0 1440 > th dose independent rect. 6 23
121 79.27 humidity 80.0 1440 < th dose independent rect. 7 1
122 79.27 atmosphere 1005.0 30 > th dose dependent rect. 2 1
126 79.30 wind 9.0 30 < th dose independent rect. 3 23
132 79.33 atmosphere 1005.0 30 > th dose independent rect. 2 1
134 79.34 temperature 20.0 30 > th dose dependent rect. 2 1
135 79.37 temperature 20.0 30 > th dose independent rect. 2 1
140 79.38 wind 3.0 30 < th dose dependent rect. 2 1
157 79.46 humidity 80.0 10 < th dose dependent rect. 23 9
158 79.47 temperature 25.0 30 < th dose independent rect. 2 1
164 79.49 temperature 30.0 720 < th dose independent rect. 18 8
165 79.49 humidity 80.0 90 < th dose dependent rect. 23 9
167 79.50 humidity 80.0 30 > th dose independent rect. 2 1
169 79.50 humidity 80.0 90 < th dose dependent rect. 1 6
172 79.51 humidity 80.0 90 < th dose independent rect. 24 8
181 79.52 temperature 10.0 30 > th dose independent rect. 2 1
184 79.52 humidity 50.0 30 > th dose independent rect. 2 1
188 79.52 atmosphere 1010.0 30 < th dose independent rect. 2 1
190 79.52 radiation 1.0 30 < th dose independent rect. 2 1
195 79.52 precipitation 0.1 30 < th dose independent rect. 2 1
197 79.52 temperature 10.0 30 > th dose independent rect. 3 23
199 79.52 humidity 50.0 30 > th dose dependent rect. 2 1
201 79.52 radiation 1.0 30 < th dose dependent rect. 2 1
206 79.52 precipitation 0.1 30 < th dose dependent rect. 2 1
211 79.53 humidity 50.0 1440 < th dose independent rect. 16 1
217 79.54 humidity 90.0 90 > th dose independent rect. 4 1
222 79.55 humidity 90.0 90 > th dose dependent rect. 4 1
227 79.57 humidity 50.0 1440 < th dose dependent rect. 16 1
236 79.59 humidity 80.0 10 < th dose dependent rect. 5 3
239 79.60 humidity 80.0 10 < th dose dependent rect. 7 1
243 79.60 humidity 70.0 30 < th dose dependent rect. 18 14
250 79.62 humidity 70.0 1440 > th dose independent rect. 19 13
258 79.63 humidity 80.0 10 < th dose dependent rect. 20 12
259 79.64 humidity 70.0 30 < th dose independent rect. 19 13
260 79.64 wind 1.0 10 > th dose independent rect. 23 14
274 79.66 radiation 30.0 10 > th dose independent rect. 15 17
280 79.66 wind 1.0 90 < th dose dependent rect. 4 23
286 79.68 wind 9.0 1440 < th dose independent rect. 3 3
287 79.68 temperature 10.0 1440 > th dose independent rect. 3 3
290 79.68 temperature 30.0 1440 < th dose independent rect. 3 3
294 79.68 humidity 50.0 1440 > th dose independent rect. 3 3
303 79.68 atmosphere 995.0 1440 > th dose independent rect. 3 3
304 79.68 radiation 20.0 1440 < th dose independent rect. 3 3
314 79.68 temperature 10.0 1440 > th dose independent rect. 6 21
327 79.70 humidity 80.0 90 < th dose independent rect. 6 1
336 79.70 atmosphere 1015.0 30 < th dose dependent rect. 2 1
340 79.71 radiation 30.0 10 > th dose independent rect. 7 1
391 79.71 radiation 30.0 10 > th dose dependent rect. 7 1
440 79.72 humidity 70.0 10 < th dose independent rect. 7 1
513 79.72 humidity 70.0 1440 < th dose independent rect. 19 13
632 79.73 temperature 30.0 30 < th dose dependent rect. 2 1
671 79.74 temperature 20.0 30 > th dose dependent rect. 4 3
759 79.76 wind 1.0 90 < th dose dependent rect. 4 18
800 79.80 temperature 20.0 10 > th dose dependent rect. 2 4
820 79.85 wind 1.0 30 > th dose independent no NA NA
826 79.86 wind 1.0 30 > th dose independent rect. 20 11
831 79.86 radiation 1.0 720 > th dose dependent rect. 18 1
850 79.88 wind 3.0 30 < th dose dependent rect. 2 8
853 79.89 wind 1.0 30 > th dose independent rect. 2 1
862 79.90 atmosphere 995.0 90 > th dose dependent rect. 4 1
878 79.94 radiation 1.0 720 > th dose independent rect. 18 1
898 79.95 temperature 25.0 90 < th dose independent rect. 4 1
907 79.97 wind 1.0 30 < th dose independent sin 5 NA
963 80.01 wind 7.0 90 < th dose independent rect. 4 1
965 80.01 temperature 10.0 90 > th dose independent rect. 4 1
968 80.01 humidity 50.0 90 > th dose independent rect. 4 1
972 80.01 atmosphere 1010.0 90 < th dose independent rect. 4 1
974 80.01 radiation 20.0 90 < th dose independent rect. 4 1
977 80.01 precipitation 0.1 90 < th dose independent rect. 4 1
979 80.01 temperature 10.0 90 > th dose independent rect. 5 23
980 80.01 radiation 30.0 90 < th dose dependent rect. 4 1
982 80.01 precipitation 0.1 90 < th dose dependent rect. 4 1
986 80.02 radiation 1.0 90 < th dose independent rect. 4 1
989 80.02 wind 1.0 30 > th dose independent rect. 20 17
991 80.02 wind 1.0 30 > th dose independent rect. 23 23