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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0267600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.12 (0.0379) R2 : 0.257
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.71 (0.718) R2dE : 0.103 R2E : 0.0501
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.791 (0.0799) R2dN8 : 0.207 R2N8 : 0.154
σ : 0.713
deviance : 234.13
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_____
C
peak time of C : --
E
wheather : wind
threshold : 0.1333
memory length : 22
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6.01
open length of G : 0.919

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
224.13 0.703 3.12 0.0965 0.356 4.14 -0.421 -20.8 0.829 13.1 0.9595 34 5 0.897
227.44 0.702 3.1 0.255 0.346 5.39 -0.301 -- 0.847 13.3 0.192 20 5.47 0.819
224.69 0.698 3.12 0.0861 0.361 4.17 -- -20.2 0.82 13 0.9501 34 5 0.917
225.2 0.699 3.11 0.222 0.351 5.78 -- -- 0.824 12.8 0.2071 11 6 0.722
232.59 0.71 3.12 0.0699 -- 4.13 -- -20.2 0.82 -- 0.9197 34 5 0.883
257.67 0.753 3.11 0.217 0.342 -- -0.369 -- 0.804 12.3 -- -- -- --
258.25 0.753 3.11 0.202 0.343 -- -- -- 0.802 12.2 -- -- -- --
232.94 0.711 3.11 0.213 -- 5.73 -- -- 0.815 -- 0.2029 13 6 0.8
226.54 0.701 3.11 -- 0.348 5.75 -- -- 0.796 12.8 0.1517 15 6.02 0.723
265.66 0.762 3.12 0.191 -- -- -- -- 0.796 -- -- -- -- --
259.33 0.753 3.12 -- 0.34 -- -- -- 0.779 12.2 -- -- -- --
234.13 0.713 3.12 -- -- 5.71 -- -- 0.791 -- 0.1333 22 6.01 0.919
266.62 0.762 3.12 -- -- -- -- -- 0.775 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 225.63 wind 1.0 30 < th dose dependent rect. 5 1
2 227.01 wind 1.0 30 < th dose independent rect. 5 1
13 233.79 wind 1.0 30 < th dose dependent rect. 5 7
16 234.12 wind 1.0 30 < th dose dependent rect. 5 11
46 237.70 wind 1.0 30 < th dose independent rect. 5 7
48 237.94 wind 1.0 30 < th dose independent rect. 5 11
81 241.78 temperature 30.0 10 < th dose independent rect. 6 22
100 244.65 temperature 30.0 720 < th dose dependent rect. 6 3
101 244.67 temperature 30.0 720 < th dose dependent rect. 6 1
113 245.41 temperature 30.0 30 < th dose independent rect. 6 13
117 245.55 temperature 30.0 10 < th dose independent rect. 6 11
119 245.58 radiation 1.0 90 < th dose independent rect. 10 1
121 245.58 radiation 1.0 90 < th dose dependent rect. 10 1
123 245.66 temperature 30.0 30 < th dose independent rect. 13 23
124 245.69 temperature 30.0 30 < th dose independent rect. 6 17
136 245.99 wind 1.0 30 < th dose dependent sin 1 NA
140 246.14 atmosphere 1015.0 90 < th dose independent rect. 5 23
141 246.17 atmosphere 1015.0 10 < th dose independent rect. 6 22
145 246.24 temperature 10.0 720 > th dose dependent rect. 3 9
151 246.35 radiation 1.0 10 < th dose independent rect. 7 5
153 246.35 radiation 1.0 10 < th dose dependent rect. 7 5
162 246.55 temperature 30.0 10 > th dose independent rect. 18 22
164 246.63 temperature 30.0 30 < th dose independent rect. 6 15
201 247.26 temperature 30.0 10 < th dose independent rect. 1 23
204 247.30 temperature 25.0 90 > th dose independent rect. 1 1
205 247.30 radiation 10.0 10 < th dose dependent rect. 11 1
208 247.33 temperature 10.0 720 > th dose dependent rect. 24 15
210 247.35 temperature 30.0 10 < th dose independent rect. 9 19
217 247.44 wind 1.0 270 < th dose dependent rect. 3 1
219 247.46 temperature 30.0 10 > th dose independent rect. 15 22
220 247.47 radiation 1.0 30 > th dose independent rect. 18 12
241 247.66 wind 1.0 270 < th dose dependent rect. 3 3
245 247.69 atmosphere 1015.0 30 < th dose independent rect. 13 23
249 247.71 temperature 30.0 10 < th dose independent no NA NA
255 247.74 temperature 30.0 10 < th dose independent rect. 11 23
257 247.75 atmosphere 1015.0 720 < th dose independent rect. 15 8
258 247.76 temperature 30.0 10 > th dose independent rect. 18 19
263 247.80 temperature 30.0 10 < th dose independent sin 21 NA
289 247.96 temperature 15.0 720 > th dose dependent rect. 7 4
302 248.06 atmosphere 1015.0 720 < th dose independent rect. 6 17
304 248.06 temperature 25.0 90 > th dose dependent rect. 1 1
315 248.12 temperature 30.0 270 < th dose dependent rect. 6 11
333 248.20 temperature 10.0 720 > th dose dependent sin 5 NA
337 248.22 temperature 30.0 10 > th dose independent rect. 10 9
381 248.31 wind 1.0 90 > th dose independent rect. 4 1
432 248.40 atmosphere 1015.0 720 < th dose independent rect. 19 23
456 248.50 precipitation 0.1 14400 > th dose independent rect. 19 2
473 248.58 precipitation 0.1 14400 < th dose independent rect. 19 2
474 248.58 precipitation 0.1 14400 < th dose dependent rect. 19 2
478 248.60 temperature 30.0 90 < th dose independent rect. 13 14
481 248.61 temperature 25.0 720 < th dose independent rect. 7 1
488 248.64 temperature 30.0 10 > th dose independent no NA NA
596 248.65 temperature 30.0 30 > th dose independent sin 20 NA
597 248.65 temperature 30.0 10 < th dose independent rect. 9 23
605 248.68 temperature 15.0 270 > th dose dependent sin 1 NA
610 248.70 temperature 25.0 720 < th dose independent rect. 6 3
613 248.70 temperature 30.0 720 < th dose dependent rect. 22 13
619 248.72 temperature 15.0 270 > th dose dependent rect. 7 11
754 248.83 temperature 30.0 10 < th dose independent rect. 15 23
757 248.84 temperature 25.0 30 > th dose dependent rect. 10 9
766 248.87 temperature 15.0 720 > th dose dependent rect. 3 2
782 248.91 temperature 30.0 10 < th dose independent rect. 9 14
799 248.97 temperature 25.0 10 > th dose dependent rect. 10 20
821 249.06 temperature 30.0 720 < th dose dependent sin 5 NA
873 249.15 temperature 25.0 30 > th dose dependent rect. 10 17
875 249.16 temperature 20.0 720 > th dose independent rect. 24 13
884 249.18 precipitation 0.1 14400 > th dose dependent rect. 19 2
899 249.21 atmosphere 1015.0 720 > th dose dependent rect. 24 21
901 249.22 temperature 20.0 720 > th dose dependent rect. 10 1
904 249.22 atmosphere 1015.0 720 > th dose dependent rect. 2 19
912 249.24 temperature 20.0 720 > th dose independent rect. 1 10
918 249.25 wind 9.0 90 < th dose dependent rect. 6 11
923 249.27 temperature 20.0 720 > th dose independent rect. 3 8
974 249.39 wind 3.0 10 < th dose independent rect. 12 1
982 249.41 atmosphere 1005.0 10 < th dose independent rect. 5 1