BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0201800 Os04g0201800|Os04g0201800
         (203 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0201800  Conserved hypothetical protein                      318   1e-87
Os02g0101000  Amino acid/polyamine transporter II family pro...   166   1e-41

>Os04g0201800 Conserved hypothetical protein
          Length = 203

 Score =  318 bits (816), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 164/203 (80%), Positives = 164/203 (80%)

Query: 1   MDNSVSDRSFLIDSXXXXXXXXXXXXGKRRXXXXXXXXXXXXXXXXCGTPRVXXXXXXXX 60
           MDNSVSDRSFLIDS            GKRR                CGTPRV        
Sbjct: 1   MDNSVSDRSFLIDSDEEDDAAAAVEDGKRRGHGGDESDDGSDSSSSCGTPRVAAAGGGGG 60

Query: 61  XXXSQPSSYTQQWPQSYRQSIDMYSSVQSPNLSFLGTPTLSRLSNSFLTASFRGKPPEII 120
              SQPSSYTQQWPQSYRQSIDMYSSVQSPNLSFLGTPTLSRLSNSFLTASFRGKPPEII
Sbjct: 61  GRGSQPSSYTQQWPQSYRQSIDMYSSVQSPNLSFLGTPTLSRLSNSFLTASFRGKPPEII 120

Query: 121 SGLIKPLLPTTAAADDEGDRRQQQHEDGRKSSQYLLPPRRPSSLQKIPEDQKPLVVGHHE 180
           SGLIKPLLPTTAAADDEGDRRQQQHEDGRKSSQYLLPPRRPSSLQKIPEDQKPLVVGHHE
Sbjct: 121 SGLIKPLLPTTAAADDEGDRRQQQHEDGRKSSQYLLPPRRPSSLQKIPEDQKPLVVGHHE 180

Query: 181 VGPYRQCTYTQGVLNGMFWVHLV 203
           VGPYRQCTYTQGVLNGMFWVHLV
Sbjct: 181 VGPYRQCTYTQGVLNGMFWVHLV 203



>Os02g0101000 Amino acid/polyamine transporter II family protein
          Length = 571

 Score =  166 bits (420), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 98/152 (64%), Positives = 115/152 (75%), Gaps = 18/152 (11%)

Query: 47  CGTPRVXXXXXXXXXXXSQPSSY-TQQWPQSYRQSIDMYSSVQSPNLSFLGTPTLSRLSN 105
           C TPR              PSSY T QWPQSYRQSID+YSSVQSPNLSFLGTPTLSRLSN
Sbjct: 59  CATPR--------------PSSYATHQWPQSYRQSIDIYSSVQSPNLSFLGTPTLSRLSN 104

Query: 106 SFLTASFRGKPPEIISGLIKPLLPTTAAADDEGDRRQQQHEDGRKSSQYLLPPRRPSSLQ 165
           SFLT SFRGK PEI+S L+KPLL  ++++DD+  ++Q   +  RKSSQYLLP R+P SLQ
Sbjct: 105 SFLTNSFRGKTPEILSNLVKPLLRPSSSSDDQQQQQQHDDDT-RKSSQYLLPSRKP-SLQ 162

Query: 166 KIPEDQKPLVVGHHEVGPYRQCTYTQGVLNGM 197
           +IPEDQKPLV   HEV  Y+QC+YTQ V+NG+
Sbjct: 163 QIPEDQKPLVPA-HEVPAYQQCSYTQAVMNGI 193



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.132    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,423,039
Number of extensions: 268116
Number of successful extensions: 954
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 950
Number of HSP's successfully gapped: 2
Length of query: 203
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 107
Effective length of database: 12,023,257
Effective search space: 1286488499
Effective search space used: 1286488499
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 153 (63.5 bits)