BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0183100 Os04g0183100|AK071690
         (405 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0183100  Conserved hypothetical protein                      811   0.0  
Os07g0248900  Conserved hypothetical protein                      655   0.0  
Os10g0102900                                                      648   0.0  

>Os04g0183100 Conserved hypothetical protein
          Length = 405

 Score =  811 bits (2096), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/405 (96%), Positives = 391/405 (96%)

Query: 1   MAGPPPHQPSSSGDXXXXXXXXXXXXXXRNKLLSMVKKHSDLIGWTVIDAEADASDVEMD 60
           MAGPPPHQPSSSGD              RNKLLSMVKKHSDLIGWTVIDAEADASDVEMD
Sbjct: 1   MAGPPPHQPSSSGDVEVAVESGSGASSSRNKLLSMVKKHSDLIGWTVIDAEADASDVEMD 60

Query: 61  DKFWHEILDLFFVHGRVSKGREEDDLVFFVNNMKLNGYRSSDNMENPPPFFVRRWAPKLE 120
           DKFWHEILDLFFVHGRVSKGREEDDLVFFVNNMKLNGYRSSDNMENPPPFFVRRWAPKLE
Sbjct: 61  DKFWHEILDLFFVHGRVSKGREEDDLVFFVNNMKLNGYRSSDNMENPPPFFVRRWAPKLE 120

Query: 121 KITNINLADVNWERSFYLNLIAHTSYSVTVAICSIMDLCNRAEKSKPLSPVYKVTKTVYA 180
           KITNINLADVNWERSFYLNLIAHTSYSVTVAICSIMDLCNRAEKSKPLSPVYKVTKTVYA
Sbjct: 121 KITNINLADVNWERSFYLNLIAHTSYSVTVAICSIMDLCNRAEKSKPLSPVYKVTKTVYA 180

Query: 181 SPSRVNFHLDRRKAVETVPAYPNICFSIDDFDDTFDAVQVLSDPEHCYCVILNAHDGAAF 240
           SPSRVNFHLDRRKAVETVPAYPNICFSIDDFDDTFDAVQVLSDPEHCYCVILNAHDGAAF
Sbjct: 181 SPSRVNFHLDRRKAVETVPAYPNICFSIDDFDDTFDAVQVLSDPEHCYCVILNAHDGAAF 240

Query: 241 PENTESKNPSSNVLSGVNTGSKQEKPPKRTLFSGYVSYQNVREAYDAGRSKFESLFSLGH 300
           PENTESKNPSSNVLSGVNTGSKQEKPPKRTLFSGYVSYQNVREAYDAGRSKFESLFSLGH
Sbjct: 241 PENTESKNPSSNVLSGVNTGSKQEKPPKRTLFSGYVSYQNVREAYDAGRSKFESLFSLGH 300

Query: 301 DRTKLDKLYMRGPEGRGEVEVAVSGIADQSHERSKKDPGNSFRALVHSAASTASKLAKHA 360
           DRTKLDKLYMRGPEGRGEVEVAVSGIADQSHERSKKDPGNSFRALVHSAASTASKLAKHA
Sbjct: 301 DRTKLDKLYMRGPEGRGEVEVAVSGIADQSHERSKKDPGNSFRALVHSAASTASKLAKHA 360

Query: 361 YEAASTNKRFDDELLPLKCCLMSVSLPWDYIAHDLLHKETPPLDL 405
           YEAASTNKRFDDELLPLKCCLMSVSLPWDYIAHDLLHKETPPLDL
Sbjct: 361 YEAASTNKRFDDELLPLKCCLMSVSLPWDYIAHDLLHKETPPLDL 405



>Os07g0248900 Conserved hypothetical protein
          Length = 411

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/378 (87%), Positives = 351/378 (92%), Gaps = 5/378 (1%)

Query: 29  RNKLLSMVKKHSDLIGWTVIDAEADASDVEMDDKFWHEILDLFFVHGRVSKGREEDDLVF 88
           RN+LL+MVKKHS LIGWTV+DAE DASDV MDD+FWHE+LDLFFV GRVSK REEDDLVF
Sbjct: 38  RNELLTMVKKHSHLIGWTVVDAEDDASDVGMDDRFWHEMLDLFFVRGRVSKRREEDDLVF 97

Query: 89  FVNN-MKLNGYRSSDNMENPPPFFVRRWAPKLEKITNINLADVNWERSFYLNLIAHTSYS 147
           FVNN MK++G+  +DNME+PPPFFVRRWAP LEKI+NIN A V+WERSFYLNLIAHTSY+
Sbjct: 98  FVNNNMKMHGHGFNDNMEDPPPFFVRRWAPMLEKISNINSAGVDWERSFYLNLIAHTSYT 157

Query: 148 VTVAICSIMDLCNRAEKSKPLSPVYKVTKTVYASPSRVNFHLDRRKAVETVPAYPNICFS 207
           VTVAICS+ DL +R EKSKPLSPVYKVTKTVYASPSRVNFHLDRRKAVETVPAYPNICFS
Sbjct: 158 VTVAICSVRDLRSRVEKSKPLSPVYKVTKTVYASPSRVNFHLDRRKAVETVPAYPNICFS 217

Query: 208 IDDFDDTFDAVQVLSDPEHCYCVILNAHDGAAFPENTESKNPSSNVLSGVNTGSKQEKPP 267
           +DDFDDTFDAV VLSDPEHCYCVILNAHDGAAFPE+TESKN SSN+L   NTGS QEKPP
Sbjct: 218 VDDFDDTFDAV-VLSDPEHCYCVILNAHDGAAFPEDTESKNASSNLL---NTGSNQEKPP 273

Query: 268 KRTLFSGYVSYQNVREAYDAGRSKFESLFSLGHDRTKLDKLYMRGPEGRGEVEVAVSGIA 327
           KRTLFSGYVSYQNVREAY+AGRS+F SL SLGHD+TKLDKLYMRGPEGRGEVEVAVSGIA
Sbjct: 274 KRTLFSGYVSYQNVREAYNAGRSQFGSLLSLGHDQTKLDKLYMRGPEGRGEVEVAVSGIA 333

Query: 328 DQSHERSKKDPGNSFRALVHSAASTASKLAKHAYEAASTNKRFDDELLPLKCCLMSVSLP 387
           DQSHERSKKDPG+SFR  VH AAS ASKLAKHAYEAASTNKRFD ELLPLKCCLMSVSLP
Sbjct: 334 DQSHERSKKDPGDSFRVFVHRAASAASKLAKHAYEAASTNKRFDHELLPLKCCLMSVSLP 393

Query: 388 WDYIAHDLLHKETPPLDL 405
           WDYIAHDLLHKETPPLDL
Sbjct: 394 WDYIAHDLLHKETPPLDL 411



>Os10g0102900 
          Length = 418

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/371 (87%), Positives = 346/371 (93%), Gaps = 5/371 (1%)

Query: 29  RNKLLSMVKKHSDLIGWTVIDAEADASDVEMDDKFWHEILDLFFVHGRVSKGREEDDLVF 88
           RN+LL+MVKKHS LIGWTV+DAE DASDV MDD+FWHE+LDLFFV GRVSK REEDDLVF
Sbjct: 40  RNELLTMVKKHSHLIGWTVVDAEDDASDVGMDDRFWHEMLDLFFVRGRVSKRREEDDLVF 99

Query: 89  FVNN-MKLNGYRSSDNMENPPPFFVRRWAPKLEKITNINLADVNWERSFYLNLIAHTSYS 147
           FVNN MK++G+  +DNME+PPPFFVRRWAP LEKI+NIN A V+WERSFYLNLIAHTSY+
Sbjct: 100 FVNNNMKMHGHGFNDNMEDPPPFFVRRWAPMLEKISNINSAGVDWERSFYLNLIAHTSYT 159

Query: 148 VTVAICSIMDLCNRAEKSKPLSPVYKVTKTVYASPSRVNFHLDRRKAVETVPAYPNICFS 207
           VTVAICS+ DLC+RAEKSKPLSPVYKVTKTVYASPSRVNFHLDRRKAVETVPAYPNICFS
Sbjct: 160 VTVAICSVRDLCSRAEKSKPLSPVYKVTKTVYASPSRVNFHLDRRKAVETVPAYPNICFS 219

Query: 208 IDDFDDTFDAVQVLSDPEHCYCVILNAHDGAAFPENTESKNPSSNVLSGVNTGSKQEKPP 267
           +DDFDDTFDAV VLSDPEHCYCVILNAHDGAAFPE+TESKN SSN+L   NTGS QEKPP
Sbjct: 220 VDDFDDTFDAV-VLSDPEHCYCVILNAHDGAAFPEDTESKNASSNLL---NTGSNQEKPP 275

Query: 268 KRTLFSGYVSYQNVREAYDAGRSKFESLFSLGHDRTKLDKLYMRGPEGRGEVEVAVSGIA 327
           KRTLFSGYVSYQNVREAY+AGRS+F SL SLGHD+TKLDKLYMRGPEGRGEVEVAVSGIA
Sbjct: 276 KRTLFSGYVSYQNVREAYNAGRSQFGSLLSLGHDQTKLDKLYMRGPEGRGEVEVAVSGIA 335

Query: 328 DQSHERSKKDPGNSFRALVHSAASTASKLAKHAYEAASTNKRFDDELLPLKCCLMSVSLP 387
           DQSHERSKKDPG+SFR  VH AAS ASKLAKHAYEAASTNKRFD ELLPLKCCLMSVSLP
Sbjct: 336 DQSHERSKKDPGDSFRVFVHRAASAASKLAKHAYEAASTNKRFDHELLPLKCCLMSVSLP 395

Query: 388 WDYIAHDLLHK 398
           WDYIAHDLLHK
Sbjct: 396 WDYIAHDLLHK 406



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.133    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,680,227
Number of extensions: 594928
Number of successful extensions: 1490
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1483
Number of HSP's successfully gapped: 3
Length of query: 405
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 302
Effective length of database: 11,657,759
Effective search space: 3520643218
Effective search space used: 3520643218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)