BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0182600 Os04g0182600|012-026-H09
         (383 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0182600  Conserved hypothetical protein                      610   e-175
Os01g0187400  Conserved hypothetical protein                      243   1e-64

>Os04g0182600 Conserved hypothetical protein
          Length = 383

 Score =  610 bits (1574), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 308/360 (85%), Positives = 308/360 (85%)

Query: 24  SPASGLVLADEXXXXXXXXXXXXXXXAVRGEFPCGSHTARSRSCEEMNGSGSFDTTCVIG 83
           SPASGLVLADE               AVRGEFPCGSHTARSRSCEEMNGSGSFDTTCVIG
Sbjct: 24  SPASGLVLADEGGGGGGAGGRSFDGGAVRGEFPCGSHTARSRSCEEMNGSGSFDTTCVIG 83

Query: 84  SSSSLDGDLCVYGDGSVVISPHVKIICPVAGCYIAINVSGSITIGEHVDLIAGSVSLYAT 143
           SSSSLDGDLCVYGDGSVVISPHVKIICPVAGCYIAINVSGSITIGEHVDLIAGSVSLYAT
Sbjct: 84  SSSSLDGDLCVYGDGSVVISPHVKIICPVAGCYIAINVSGSITIGEHVDLIAGSVSLYAT 143

Query: 144 NVSLDQRSTVNTTGLAGEPPPQTSGTPHSLEXXXXXXXXXXXSCKVSNDTNWGGDVYAWS 203
           NVSLDQRSTVNTTGLAGEPPPQTSGTPHSLE           SCKVSNDTNWGGDVYAWS
Sbjct: 144 NVSLDQRSTVNTTGLAGEPPPQTSGTPHSLEGAGGGHGGRGASCKVSNDTNWGGDVYAWS 203

Query: 204 TLAWPWSYGSKGGSMAADHQFGGDGGGRVMLRASEFMNVDGDVLAEXXXXXXXXXXXXXX 263
           TLAWPWSYGSKGGSMAADHQFGGDGGGRVMLRASEFMNVDGDVLAE              
Sbjct: 204 TLAWPWSYGSKGGSMAADHQFGGDGGGRVMLRASEFMNVDGDVLAEGGVGSLKGGGGSGG 263

Query: 264 XIMIYAFKLYGNGTISAAXXXXXXXXXXXRISLDCYSIQQDLEITVHGGQSFGCPQNAGA 323
            IMIYAFKLYGNGTISAA           RISLDCYSIQQDLEITVHGGQSFGCPQNAGA
Sbjct: 264 SIMIYAFKLYGNGTISAAGGNGWGGGGGGRISLDCYSIQQDLEITVHGGQSFGCPQNAGA 323

Query: 324 AGTIYESSLQTLKVSNGNYTTHTETPLLGFPMTRLWSNVLVECNAKVLVPLLWSRVQVCT 383
           AGTIYESSLQTLKVSNGNYTTHTETPLLGFPMTRLWSNVLVECNAKVLVPLLWSRVQVCT
Sbjct: 324 AGTIYESSLQTLKVSNGNYTTHTETPLLGFPMTRLWSNVLVECNAKVLVPLLWSRVQVCT 383



>Os01g0187400 Conserved hypothetical protein
          Length = 1431

 Score =  243 bits (621), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 136/325 (41%), Positives = 190/325 (58%), Gaps = 6/325 (1%)

Query: 62  ARSRSCE-EMNGSGSFDTTCVIGSSSSLDGDLCVYGDGSVVISPHVKIICPVAGCYIAIN 120
           A + +CE +++G G+F T C +     L GD+ + G+GS+V+     + C   GC I+ N
Sbjct: 64  APAATCEGDLHGKGNFSTRCEVSEEVELGGDVYITGEGSLVLLAGAALTCQRPGCVISAN 123

Query: 121 VSGSITIGEHVDLIAGSVSLYATNVSLDQRSTVNTTGLAGEPPPQTSGTPHSLEXXXXXX 180
           +SG + +G  V +IAG VSL A NV++     VNTT LAG+PP +TSG P          
Sbjct: 124 LSGEVRLGRGVRVIAGRVSLAAANVTIADTVVVNTTALAGDPPERTSGVPTGTHGDGGGH 183

Query: 181 XXXXXSCKVSN----DTNWGGDVYAWSTLAWPWSYGSKGGSMAADHQFGGDGGGRVMLRA 236
                SC V +    + +WGGD YAWS L  P+SYGSKGGS + +  +GG GGG V L A
Sbjct: 184 GGRGASCYVKDGQTQEDSWGGDAYAWSDLEHPFSYGSKGGSTSVEKDYGGSGGGIVWLYA 243

Query: 237 SEFMNVDGDVLAEXXXXXXXXXXXXXXXIMIYAFKLYGNGTISAAXXXXXXXXXXXRISL 296
            + + ++G VLA+               I I +  ++G G ISA+           R+S+
Sbjct: 244 DDLI-MNGTVLADGGDSSEKGGGGSGGSIYIKSKTMHGAGKISASGGNGLAGGGGGRVSI 302

Query: 297 DCYSIQQDLEITVHGGQSFGCPQNAGAAGTIYESSLQTLKVSNGNYTTHTETPLLGFPMT 356
           + +S   D ++  HGG+S GCP NAGAAGT+YE+  ++L VSN N +T T+T LL FP  
Sbjct: 303 NVFSRHDDTQVFAHGGKSSGCPDNAGAAGTLYEAVPKSLVVSNNNLSTQTDTLLLEFPNQ 362

Query: 357 RLWSNVLVECNAKVLVPLLWSRVQV 381
            LW+NV V+ +AKV VPLLWSRVQV
Sbjct: 363 PLWTNVFVKNHAKVAVPLLWSRVQV 387



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.133    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,003,406
Number of extensions: 501189
Number of successful extensions: 1470
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1467
Number of HSP's successfully gapped: 2
Length of query: 383
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 280
Effective length of database: 11,657,759
Effective search space: 3264172520
Effective search space used: 3264172520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)