FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0182600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.75 (0.0325) R2 : 1.75e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00612 (0.0684) R2dN8 : 2.26e-05 R2N8 : 1.75e-05
σ : 0.612
deviance : 171.89
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
165.29 0.604 2.75 -0.0531 0.229 -0.175 1.9 -1.04 0.0026 11.9 11.47 29 -- --
167.57 0.603 2.74 -0.0751 0.229 -0.188 1.02 -- 0.0156 11.7 11.48 29 -- --
168.58 0.605 2.75 0.00192 0.111 -0.0611 -- 0.679 0.00362 12.5 0.04568 58 -- --
171.19 0.609 2.74 0.0037 0.184 -0.14 -- -- 0.0221 11 10.05 45 -- --
168.58 0.605 2.74 0.0466 -- 0.0096 -- 0.771 0.0181 -- 0.21 79 -- --
168.31 0.608 2.75 -0.0458 0.0363 -- 0.9 -- 0.00127 12 -- -- -- --
171.63 0.614 2.75 -0.0118 0.0688 -- -- -- 0.00397 7.92 -- -- -- --
171.69 0.613 2.75 -0.00811 -- 0.0428 -- -- 0.0067 -- 5.55 113 -- --
171.18 0.609 2.74 -- 0.171 -0.127 -- -- 0.0222 11 10 45 -- --
171.89 0.613 2.75 -0.0111 -- -- -- -- 0.00488 -- -- -- -- --
171.64 0.613 2.75 -- 0.0687 -- -- -- 0.00529 7.94 -- -- -- --
171.69 0.612 2.75 -- -- 0.043 -- -- 0.0076 -- 5.55 113 -- --
171.89 0.612 2.75 -- -- -- -- -- 0.00612 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 157.15 radiation 30.0 10 > th dose dependent rect. 8 1
3 157.21 wind 1.0 90 < th dose independent rect. 6 2
4 158.18 wind 1.0 90 < th dose dependent rect. 6 2
8 158.76 wind 1.0 90 < th dose independent rect. 6 10
13 158.89 wind 1.0 90 < th dose independent rect. 6 6
21 159.68 wind 1.0 90 < th dose dependent rect. 6 10
31 160.05 wind 1.0 90 < th dose dependent rect. 6 6
65 160.16 precipitation 0.1 270 > th dose dependent rect. 4 11
69 160.26 precipitation 0.1 270 > th dose independent rect. 4 11
73 160.47 temperature 25.0 10 > th dose dependent rect. 7 1
77 160.71 temperature 25.0 90 > th dose dependent rect. 1 7
81 160.93 temperature 25.0 90 > th dose dependent rect. 4 4
86 161.61 radiation 10.0 10 < th dose dependent rect. 12 1
88 161.72 radiation 10.0 10 < th dose independent rect. 11 2
90 161.75 radiation 30.0 10 > th dose independent rect. 8 1
94 161.81 temperature 25.0 90 > th dose independent rect. 1 7
95 161.81 precipitation 0.1 270 > th dose dependent rect. 13 1
101 161.84 precipitation 0.1 270 > th dose independent rect. 13 1
115 161.93 humidity 90.0 1440 > th dose independent rect. 13 1
117 161.94 humidity 90.0 1440 > th dose dependent rect. 13 1
119 161.98 radiation 10.0 30 < th dose independent rect. 6 10
120 162.00 radiation 10.0 10 < th dose independent rect. 11 15
128 162.09 temperature 25.0 720 > th dose independent rect. 1 2
129 162.09 temperature 25.0 90 > th dose independent rect. 1 5
132 162.09 radiation 10.0 10 < th dose dependent rect. 6 7
133 162.10 temperature 30.0 90 > th dose independent rect. 11 2
145 162.21 precipitation 0.1 1440 > th dose dependent rect. 13 2
149 162.28 radiation 10.0 10 < th dose independent rect. 11 5
156 162.38 radiation 10.0 10 < th dose independent rect. 7 19
157 162.39 precipitation 0.1 1440 < th dose independent rect. 10 5
160 162.39 precipitation 0.1 1440 < th dose dependent rect. 10 5
163 162.40 radiation 20.0 30 < th dose dependent rect. 6 10
164 162.44 precipitation 0.1 1440 > th dose independent rect. 13 2
167 162.46 precipitation 0.1 1440 > th dose dependent rect. 10 5
178 162.49 humidity 90.0 30 > th dose independent rect. 2 1
180 162.49 wind 1.0 10 < th dose dependent rect. 7 1
184 162.51 precipitation 0.1 1440 < th dose independent rect. 13 2
185 162.51 radiation 10.0 90 < th dose independent rect. 10 7
186 162.51 humidity 80.0 30 > th dose dependent rect. 2 1
187 162.51 precipitation 0.1 1440 < th dose dependent rect. 13 2
193 162.53 temperature 25.0 720 > th dose dependent rect. 1 1
194 162.53 temperature 20.0 30 > th dose dependent rect. 2 1
198 162.55 wind 3.0 30 < th dose dependent rect. 2 1
199 162.56 wind 1.0 30 < th dose independent rect. 2 1
209 162.59 humidity 90.0 1440 < th dose independent rect. 13 1
222 162.63 wind 5.0 30 < th dose independent rect. 2 1
225 162.64 temperature 25.0 30 < th dose independent rect. 2 1
230 162.66 temperature 10.0 30 > th dose independent rect. 2 1
233 162.66 humidity 50.0 30 > th dose independent rect. 2 1
236 162.66 atmosphere 995.0 30 > th dose independent rect. 2 1
237 162.66 atmosphere 1010.0 30 < th dose independent rect. 2 1
239 162.66 radiation 1.0 30 < th dose independent rect. 2 1
244 162.66 precipitation 0.1 30 < th dose independent rect. 2 1
245 162.66 temperature 10.0 30 > th dose independent rect. 3 23
247 162.66 atmosphere 995.0 30 > th dose dependent rect. 2 1
249 162.66 radiation 1.0 30 < th dose dependent rect. 2 1
254 162.66 precipitation 0.1 30 < th dose dependent rect. 2 1
260 162.68 wind 1.0 90 < th dose dependent rect. 6 21
276 162.74 precipitation 0.1 1440 > th dose independent rect. 10 5
284 162.76 atmosphere 1015.0 30 < th dose dependent rect. 2 1
293 162.82 temperature 25.0 10 > th dose independent rect. 7 1
318 162.87 wind 1.0 10 < th dose independent rect. 7 1
319 162.87 temperature 25.0 1440 < th dose independent rect. 1 1
338 162.96 temperature 30.0 30 < th dose dependent rect. 2 1
368 163.08 temperature 25.0 720 < th dose independent rect. 24 7
406 163.16 temperature 25.0 720 > th dose independent rect. 23 8
443 163.28 temperature 25.0 90 > th dose independent rect. 4 4
455 163.30 radiation 20.0 10 < th dose dependent rect. 11 15
484 163.38 radiation 10.0 10 < th dose independent rect. 7 6
495 163.41 wind 1.0 30 > th dose independent rect. 2 1
502 163.42 humidity 90.0 1440 < th dose independent rect. 10 4
503 163.42 wind 1.0 90 < th dose independent rect. 6 21
510 163.44 humidity 70.0 720 > th dose independent rect. 8 1
527 163.46 radiation 10.0 10 < th dose dependent rect. 5 21
539 163.49 temperature 30.0 90 > th dose dependent rect. 10 3
587 163.58 humidity 90.0 1440 < th dose independent rect. 13 4
601 163.60 humidity 90.0 270 > th dose independent rect. 12 2
625 163.66 precipitation 0.1 270 > th dose independent sin 3 NA
687 163.74 precipitation 0.1 90 > th dose independent rect. 5 3
692 163.74 precipitation 0.1 90 > th dose dependent rect. 5 3
698 163.76 precipitation 0.1 270 < th dose independent sin 3 NA
701 163.76 precipitation 0.1 270 < th dose dependent sin 3 NA
710 163.79 atmosphere 1010.0 90 < th dose independent rect. 8 13
712 163.79 precipitation 0.1 270 > th dose dependent sin 4 NA
781 163.90 temperature 25.0 90 > th dose independent rect. 1 15
785 163.91 temperature 30.0 10 > th dose dependent rect. 11 3
809 163.96 humidity 90.0 1440 > th dose independent rect. 13 4
836 163.99 precipitation 0.1 270 > th dose independent rect. 5 1
842 163.99 precipitation 0.1 270 > th dose dependent rect. 5 1
886 164.01 atmosphere 1010.0 30 < th dose independent rect. 8 15
932 164.06 radiation 20.0 10 < th dose dependent rect. 11 5
975 164.11 humidity 70.0 90 < th dose independent rect. 10 1
978 164.11 wind 1.0 1440 < th dose dependent rect. 9 1
991 164.14 temperature 15.0 90 > th dose independent rect. 21 11