BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0165600 Os04g0165600|AK062476
(164 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0165600 Peptidase S26A, signal peptidase I family protein 332 1e-91
Os03g0147900 Peptidase S26A, signal peptidase I family protein 153 5e-38
Os11g0620000 Peptidase S26A, signal peptidase I family protein 79 1e-15
>Os04g0165600 Peptidase S26A, signal peptidase I family protein
Length = 164
Score = 332 bits (850), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 164/164 (100%), Positives = 164/164 (100%)
Query: 1 MAGPWPLLRSFLRNCVAGTLVVVTVNDRYASVITVRGTSMNPTLESQQGDRALVSRLCLD 60
MAGPWPLLRSFLRNCVAGTLVVVTVNDRYASVITVRGTSMNPTLESQQGDRALVSRLCLD
Sbjct: 1 MAGPWPLLRSFLRNCVAGTLVVVTVNDRYASVITVRGTSMNPTLESQQGDRALVSRLCLD 60
Query: 61 ARYGLSRGDVVVFRSPTEHRSLLVKRLIALPGDWIQVPAAQEIRQIPVGHCWVEGDNPDV 120
ARYGLSRGDVVVFRSPTEHRSLLVKRLIALPGDWIQVPAAQEIRQIPVGHCWVEGDNPDV
Sbjct: 61 ARYGLSRGDVVVFRSPTEHRSLLVKRLIALPGDWIQVPAAQEIRQIPVGHCWVEGDNPDV 120
Query: 121 SWDSRSYGPIPLGLMQGRVTHIVWPPNRIGPVERKMPEGRVMQR 164
SWDSRSYGPIPLGLMQGRVTHIVWPPNRIGPVERKMPEGRVMQR
Sbjct: 121 SWDSRSYGPIPLGLMQGRVTHIVWPPNRIGPVERKMPEGRVMQR 164
>Os03g0147900 Peptidase S26A, signal peptidase I family protein
Length = 181
Score = 153 bits (387), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 68/114 (59%), Positives = 88/114 (77%), Gaps = 1/114 (0%)
Query: 48 QGDRALVSRLCLDARYGLSRGDVVVFRSPTEHRSLLVKRLIALPGDWIQVPAAQEIRQIP 107
+G L R CL +Y S GDVV+F+ P++HR L VKRLIALPG+W+Q+P +I +IP
Sbjct: 66 RGAVVLAERSCLQ-KYQFSHGDVVLFKCPSDHRELFVKRLIALPGEWMQLPGTPDIIKIP 124
Query: 108 VGHCWVEGDNPDVSWDSRSYGPIPLGLMQGRVTHIVWPPNRIGPVERKMPEGRV 161
GHCWVEGDN SWDSRS+GPIPLGL++GRV H++WPP++IG V+ KMPE R+
Sbjct: 125 EGHCWVEGDNAACSWDSRSFGPIPLGLIKGRVAHVIWPPSKIGRVDTKMPENRI 178
>Os11g0620000 Peptidase S26A, signal peptidase I family protein
Length = 174
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 72/137 (52%), Gaps = 10/137 (7%)
Query: 24 TVNDRYASVITVRGTSMNPTLESQQGDRALVSRLCLDARYG-LSRGDVVVFRSPTEHRSL 82
VN S V G SM P + + GD +V+ + AR G ++ GD V+ SP R
Sbjct: 36 VVNAHVCSFALVMGPSMLPAM-NLAGD--VVAVDLVSARLGRVASGDAVLLVSPENPRKA 92
Query: 83 LVKRLIALPGDWIQV------PAAQEIRQIPVGHCWVEGDNPDVSWDSRSYGPIPLGLMQ 136
+VKR++ + GD + A + +P GH WV+GDN S DSR +GP+P GL+
Sbjct: 93 VVKRVVGMEGDAVTFLVDPGNSDASKTVVVPKGHVWVQGDNIYASRDSRQFGPVPYGLIT 152
Query: 137 GRVTHIVWPPNRIGPVE 153
G++ VWP GP++
Sbjct: 153 GKIFCRVWPLKDFGPID 169
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.139 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,167,616
Number of extensions: 258446
Number of successful extensions: 417
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 418
Number of HSP's successfully gapped: 4
Length of query: 164
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 71
Effective length of database: 12,179,899
Effective search space: 864772829
Effective search space used: 864772829
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)