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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0620000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase S26A, signal peptidase I family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.91 (0.017) R2 : 0.238
β1 : 0.702 (0.0623) R2dD : 0.22 R2D : 0.157
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.219 (0.0363) R2dN8 : 0.0814 R2N8 : 0.0182
σ : 0.319
deviance : 46.7
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
34.34 0.275 9.9 0.756 0.604 0.576 0.153 -0.204 0.267 14.7 0.04021 97 -- --
34.44 0.273 9.9 0.749 0.617 0.586 0.359 -- 0.264 14.7 0.008918 95 -- --
34.37 0.273 9.89 0.766 0.604 0.581 -- -0.283 0.272 14.7 0.04 99 -- --
34.89 0.275 9.89 0.756 0.61 0.581 -- -- 0.273 14.8 0.04117 100 -- --
40.71 0.299 9.9 0.725 -- 0.221 -- -0.327 0.238 -- 0.04 57 -- --
39.36 0.294 9.92 0.694 0.355 -- -0.3 -- 0.223 20.4 -- -- -- --
39.64 0.295 9.92 0.704 0.356 -- -- -- 0.223 20.3 -- -- -- --
41.4 0.301 9.91 0.713 -- 0.219 -- -- 0.234 -- 0.04 57 -- --
49.81 0.329 9.92 -- 0.57 0.541 -- -- 0.19 15 0.0001487 113 -- --
46.7 0.319 9.91 0.702 -- -- -- -- 0.219 -- -- -- -- --
52.7 0.34 9.94 -- 0.353 -- -- -- 0.144 20.5 -- -- -- --
54.78 0.346 9.92 -- -- 0.211 -- -- 0.153 -- 0.0001487 113 -- --
59.68 0.361 9.93 -- -- -- -- -- 0.141 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 29.91 temperature 15.0 270 > th dose independent rect. 18 9
5 30.85 humidity 60.0 270 > th dose independent rect. 18 9
6 30.85 radiation 1.0 270 < th dose independent rect. 18 9
7 30.85 radiation 1.0 270 < th dose dependent rect. 18 9
11 30.90 radiation 20.0 270 < th dose independent rect. 18 9
14 30.90 temperature 10.0 270 > th dose independent rect. 3 15
15 30.90 atmosphere 1015.0 270 < th dose independent rect. 3 15
19 30.92 wind 9.0 270 < th dose independent rect. 18 9
22 30.94 atmosphere 995.0 270 > th dose independent rect. 18 9
23 30.95 temperature 15.0 270 > th dose independent rect. 8 18
25 31.00 temperature 30.0 270 < th dose independent rect. 18 9
26 31.01 wind 9.0 270 < th dose independent rect. 7 7
27 31.02 radiation 1.0 10 < th dose dependent rect. 20 10
30 31.05 precipitation 0.1 270 < th dose independent rect. 3 15
31 31.05 precipitation 0.1 270 < th dose dependent rect. 3 15
36 31.09 precipitation 0.1 270 < th dose independent rect. 7 7
37 31.09 temperature 10.0 90 > th dose dependent rect. 8 7
38 31.09 precipitation 0.1 270 < th dose dependent rect. 7 7
40 31.12 temperature 15.0 10 > th dose independent rect. 20 9
43 31.14 radiation 1.0 10 < th dose dependent rect. 20 20
45 31.16 temperature 10.0 270 > th dose independent rect. 7 7
46 31.16 atmosphere 995.0 270 > th dose independent rect. 7 7
47 31.16 atmosphere 1015.0 270 < th dose independent rect. 7 7
49 31.16 temperature 10.0 270 > th dose independent rect. 14 17
50 31.16 radiation 1.0 90 < th dose dependent sin 12 NA
51 31.16 radiation 1.0 10 < th dose dependent rect. 20 18
53 31.17 precipitation 0.1 270 < th dose independent rect. 14 17
54 31.17 precipitation 0.1 270 < th dose dependent rect. 14 17
55 31.18 precipitation 0.1 270 < th dose independent rect. 18 9
56 31.18 precipitation 0.1 270 < th dose dependent rect. 18 9
59 31.19 radiation 1.0 10 < th dose independent rect. 20 10
60 31.20 radiation 40.0 270 < th dose independent rect. 14 17
76 31.29 radiation 1.0 270 > th dose independent rect. 7 7
81 31.33 wind 9.0 270 < th dose independent rect. 14 17
84 31.45 wind 9.0 270 < th dose independent rect. 3 15
86 31.46 humidity 90.0 90 < th dose independent rect. 8 7
97 31.49 temperature 10.0 90 > th dose dependent rect. 4 4
107 31.55 wind 1.0 270 > th dose independent rect. 7 7
109 31.55 radiation 1.0 10 < th dose independent rect. 20 18
116 31.58 atmosphere 995.0 270 > th dose independent rect. 14 17
117 31.59 humidity 50.0 270 > th dose independent rect. 7 7
120 31.60 temperature 10.0 270 > th dose dependent rect. 2 5
122 31.61 atmosphere 995.0 270 > th dose independent rect. 3 15
130 31.63 temperature 10.0 10 > th dose dependent rect. 9 7
139 31.67 wind 9.0 270 < th dose independent rect. 8 18
159 31.69 wind 9.0 10 < th dose independent rect. 9 7
165 31.70 radiation 40.0 270 < th dose dependent rect. 2 7
194 31.76 temperature 10.0 10 > th dose independent rect. 9 7
196 31.76 atmosphere 1015.0 10 < th dose independent rect. 9 7
197 31.76 precipitation 0.1 10 < th dose independent rect. 9 7
199 31.76 temperature 10.0 10 > th dose independent rect. 16 17
201 31.76 precipitation 0.1 10 < th dose dependent rect. 9 7
206 31.77 wind 9.0 270 < th dose dependent rect. 7 7
209 31.78 wind 9.0 270 < th dose independent rect. 6 21
214 31.80 precipitation 0.1 270 < th dose independent rect. 2 6
228 31.80 wind 9.0 90 < th dose dependent rect. 4 5
230 31.80 precipitation 0.1 270 < th dose dependent rect. 2 6
236 31.81 temperature 20.0 90 > th dose independent rect. 4 4
241 31.81 atmosphere 1015.0 270 < th dose independent rect. 18 9
260 31.84 humidity 80.0 270 > th dose independent rect. 3 3
262 31.84 radiation 20.0 270 < th dose independent rect. 2 6
268 31.84 radiation 40.0 90 < th dose dependent rect. 15 18
271 31.86 wind 7.0 270 < th dose independent rect. 2 6
277 31.86 radiation 1.0 270 < th dose dependent rect. 12 15
279 31.87 precipitation 0.1 270 < th dose independent rect. 3 3
283 31.87 precipitation 0.1 270 < th dose dependent rect. 3 3
284 31.87 wind 9.0 270 < th dose dependent rect. 2 5
289 31.88 radiation 40.0 270 < th dose independent rect. 2 6
290 31.88 atmosphere 995.0 10 > th dose independent rect. 16 17
293 31.89 atmosphere 995.0 10 > th dose independent rect. 9 7
308 31.91 temperature 10.0 270 > th dose independent rect. 2 6
310 31.91 temperature 30.0 270 < th dose independent rect. 2 6
311 31.91 humidity 50.0 270 > th dose independent rect. 2 6
313 31.91 atmosphere 995.0 270 > th dose independent rect. 2 6
314 31.91 atmosphere 1015.0 270 < th dose independent rect. 2 6
318 31.91 humidity 50.0 10 > th dose independent rect. 16 17
320 31.91 wind 9.0 270 < th dose dependent rect. 3 3
324 31.92 wind 9.0 10 < th dose independent rect. 16 17
331 31.93 radiation 40.0 90 < th dose independent rect. 4 5
342 31.93 precipitation 0.1 270 < th dose independent rect. 8 18
344 31.93 humidity 50.0 270 > th dose dependent rect. 2 6
347 31.93 precipitation 0.1 270 < th dose dependent rect. 8 18
350 31.94 precipitation 0.1 10 < th dose independent rect. 16 17
352 31.94 precipitation 0.1 10 < th dose dependent rect. 16 17
359 31.95 radiation 30.0 270 < th dose dependent rect. 3 4
386 31.99 wind 7.0 270 < th dose independent rect. 3 3
403 32.00 radiation 1.0 30 > th dose independent rect. 18 15
406 32.00 humidity 50.0 270 > th dose dependent rect. 3 4
407 32.01 radiation 1.0 90 < th dose independent sin 12 NA
408 32.01 radiation 1.0 10 > th dose independent rect. 5 4
410 32.01 humidity 60.0 90 > th dose independent rect. 4 5
433 32.03 temperature 10.0 270 > th dose independent rect. 3 3
435 32.03 temperature 30.0 270 < th dose independent rect. 3 3
436 32.03 humidity 50.0 270 > th dose independent rect. 3 3
439 32.03 atmosphere 995.0 270 > th dose independent rect. 3 3
440 32.03 atmosphere 1015.0 270 < th dose independent rect. 3 3
441 32.03 radiation 20.0 270 < th dose independent rect. 3 3
481 32.06 atmosphere 1015.0 270 < th dose independent rect. 7 19
506 32.09 radiation 1.0 10 > th dose independent rect. 9 7
514 32.10 wind 9.0 10 < th dose independent rect. 20 9
516 32.10 atmosphere 1010.0 10 < th dose independent rect. 20 9
529 32.11 temperature 30.0 10 < th dose independent rect. 20 9
530 32.11 humidity 50.0 10 > th dose independent rect. 20 9
533 32.11 atmosphere 995.0 10 > th dose independent rect. 20 9
539 32.11 temperature 10.0 10 > th dose independent rect. 5 15
541 32.11 atmosphere 1015.0 10 < th dose independent rect. 5 15
584 32.14 wind 1.0 10 > th dose independent rect. 9 7
585 32.14 radiation 40.0 10 < th dose independent rect. 16 17
629 32.18 radiation 1.0 90 > th dose independent sin 12 NA
685 32.23 precipitation 0.1 10 < th dose independent rect. 5 15
694 32.23 precipitation 0.1 10 < th dose dependent rect. 5 15
707 32.25 humidity 50.0 270 > th dose dependent rect. 4 1
758 32.29 temperature 10.0 90 > th dose dependent rect. 20 8
808 32.32 atmosphere 1005.0 270 > th dose independent rect. 4 2
835 32.34 radiation 1.0 270 < th dose independent rect. 12 15
841 32.34 radiation 30.0 270 < th dose dependent rect. 4 1
850 32.35 radiation 40.0 90 < th dose dependent rect. 4 15
889 32.38 atmosphere 1005.0 90 > th dose independent rect. 4 4
890 32.38 humidity 90.0 10 < th dose independent rect. 9 7
892 32.38 temperature 15.0 270 > th dose independent rect. 20 17
899 32.39 radiation 1.0 270 < th dose independent rect. 4 1
911 32.39 temperature 10.0 1440 > th dose independent rect. 10 7
926 32.39 temperature 10.0 1440 > th dose independent rect. 17 17
949 32.41 humidity 50.0 270 > th dose independent rect. 8 18
974 32.42 wind 9.0 10 < th dose dependent rect. 5 4
992 32.43 precipitation 0.1 10 < th dose independent rect. 20 9