BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0149400 Os04g0149400|AK062765
         (107 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0149400  Hypothetical protein                                206   3e-54
Os04g0142400  Conserved hypothetical protein                      135   8e-33

>Os04g0149400 Hypothetical protein
          Length = 107

 Score =  206 bits (523), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 107/107 (100%), Positives = 107/107 (100%)

Query: 1   SKMGDKKQVKLKVRGASETEVKNVLRQEFKESIEYRNYSKNPESSSLKVEVRGTVDVGKL 60
           SKMGDKKQVKLKVRGASETEVKNVLRQEFKESIEYRNYSKNPESSSLKVEVRGTVDVGKL
Sbjct: 1   SKMGDKKQVKLKVRGASETEVKNVLRQEFKESIEYRNYSKNPESSSLKVEVRGTVDVGKL 60

Query: 61  YERLKKMASSVKIESVIPDDVKEEIERYKKDLERMKRQKEDLDIKLR 107
           YERLKKMASSVKIESVIPDDVKEEIERYKKDLERMKRQKEDLDIKLR
Sbjct: 61  YERLKKMASSVKIESVIPDDVKEEIERYKKDLERMKRQKEDLDIKLR 107



>Os04g0142400 Conserved hypothetical protein
          Length = 248

 Score =  135 bits (339), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 69/103 (66%), Positives = 87/103 (84%)

Query: 3   MGDKKQVKLKVRGASETEVKNVLRQEFKESIEYRNYSKNPESSSLKVEVRGTVDVGKLYE 62
           MGDKK  KLKVRGA++ EVK+VLRQEFKES++  N+    + SSLKV+V GTVDVGKLYE
Sbjct: 1   MGDKKLTKLKVRGANDVEVKSVLRQEFKESVDQDNFKVKVDGSSLKVDVPGTVDVGKLYE 60

Query: 63  RLKKMASSVKIESVIPDDVKEEIERYKKDLERMKRQKEDLDIK 105
           RLKKM+SSVKIESV+PDD+  +++RYKKDL+ MK+QKE ++ K
Sbjct: 61  RLKKMSSSVKIESVVPDDLMAKMDRYKKDLQNMKKQKEAVESK 103



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.307    0.128    0.322 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,869,734
Number of extensions: 96133
Number of successful extensions: 695
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 695
Number of HSP's successfully gapped: 2
Length of query: 107
Length of database: 17,035,801
Length adjustment: 75
Effective length of query: 32
Effective length of database: 13,119,751
Effective search space: 419832032
Effective search space used: 419832032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 149 (62.0 bits)