Os04g0142400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0142400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 454.77 | 1 | 9.23 | -1.47 | 1.55 | 3.67 | -1.3 | 1.6 | -0.408 | 8.66 | 4.223 | 516 | -- | -- |
| 455.82 | 0.994 | 9.22 | -1.51 | 1.56 | 3.48 | -1.3 | -- | -0.413 | 8.42 | 4.179 | 479 | -- | -- |
| 458.62 | 0.997 | 9.25 | -1.55 | 1.47 | 3.89 | -- | 2.79 | -0.421 | 8.3 | 4.434 | 458 | -- | -- |
| 461.56 | 1 | 9.22 | -1.52 | 1.54 | 3.47 | -- | -- | -0.403 | 8.09 | 4.118 | 431 | -- | -- |
| 524.19 | 1.07 | 9.27 | -1.63 | -- | 3.24 | -- | 3.24 | -0.283 | -- | 8 | 1583 | -- | -- |
| 544.81 | 1.09 | 9.25 | -2.13 | 0.855 | -- | -0.912 | -- | -0.475 | 9.66 | -- | -- | -- | -- |
| 547.31 | 1.1 | 9.25 | -2.17 | 0.875 | -- | -- | -- | -0.479 | 9.19 | -- | -- | -- | -- |
| 523.11 | 1.07 | 9.25 | -1.68 | -- | 2.72 | -- | -- | -0.265 | -- | 8.058 | 1566 | -- | -- |
| 520.61 | 1.06 | 9.17 | -- | 1.72 | 4.15 | -- | -- | -0.239 | 8.22 | 4.008 | 463 | -- | -- |
| 591.71 | 1.14 | 9.28 | -2.17 | -- | -- | -- | -- | -0.475 | -- | -- | -- | -- | -- |
| 671.62 | 1.21 | 9.2 | -- | 0.875 | -- | -- | -- | -0.237 | 9.38 | -- | -- | -- | -- |
| 590.92 | 1.13 | 9.18 | -- | -- | 3.58 | -- | -- | -0.00951 | -- | 7.451 | 1562 | -- | -- |
| 716.47 | 1.25 | 9.22 | -- | -- | -- | -- | -- | -0.233 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 422.61 | wind | 5.0 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 2 | 423.72 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 4 |
| 3 | 423.76 | wind | 5.0 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 4 | 428.08 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 3 |
| 5 | 428.69 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 6 | 428.84 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 7 | 428.84 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 8 | 429.98 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 9 | 430.17 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 12 | 431.07 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 8 |
| 42 | 433.81 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 10 | 14 |
| 45 | 434.06 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 10 | 9 |
| 63 | 435.05 | wind | 5.0 | 14400 | > th | dose independent | rect. | 19 | 15 |
| 75 | 435.47 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 20 |
| 77 | 435.50 | wind | 5.0 | 14400 | < th | dose independent | rect. | 19 | 15 |
| 79 | 435.55 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 6 |
| 84 | 435.71 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 18 | NA |
| 93 | 436.18 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 15 |
| 99 | 436.25 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 7 |
| 100 | 436.25 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 7 |
| 101 | 436.25 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 7 |
| 161 | 437.67 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 14 |
| 179 | 438.21 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 13 | 9 |
| 193 | 438.49 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 196 | 438.58 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 23 |
| 201 | 438.74 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 245 | 439.86 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 254 | 440.01 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 21 |
| 279 | 440.47 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 13 | 9 |
| 288 | 440.60 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 15 |
| 289 | 440.60 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 15 |
| 293 | 440.66 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 10 | 13 |
| 294 | 440.66 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 10 | 13 |
| 306 | 440.79 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 15 |
| 309 | 440.82 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 10 | 13 |
| 316 | 440.93 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 10 |
| 318 | 440.93 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 10 |
| 355 | 441.25 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 10 |
| 503 | 442.74 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 19 | NA |
| 505 | 442.74 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 19 | NA |
| 525 | 442.89 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 19 | NA |
| 541 | 443.03 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 557 | 443.28 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 670 | 444.93 | wind | 1.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 728 | 445.83 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 19 | 16 |
| 817 | 447.59 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 20 | 9 |
| 825 | 447.71 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 889 | 448.75 | temperature | 20.0 | 14400 | > th | dose independent | sin | 19 | NA |
| 946 | 449.68 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 980 | 450.47 | wind | 5.0 | 14400 | < th | dose independent | sin | 9 | NA |
| 982 | 450.50 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 16 | 2 |
| 983 | 450.58 | wind | 5.0 | 14400 | > th | dose independent | sin | 9 | NA |