Os04g0149400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os04g0149400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 254.95 | 0.75 | 9.87 | -0.361 | 0.313 | -1.96 | -2.74 | -1.28 | -0.179 | 11.6 | 1.08 | 4326 | -- | -- |
| 256.17 | 0.745 | 9.89 | -0.567 | 0.364 | -1.72 | -2.67 | -- | -0.209 | 11.4 | 1.37 | 4315 | -- | -- |
| 266.59 | 0.76 | 9.86 | -0.305 | 1.4 | -2.98 | -- | -3.26 | -0.228 | 8.96 | 0.8096 | 4073 | -- | -- |
| 277.44 | 0.776 | 9.88 | -0.689 | 1.19 | -2.23 | -- | -- | -0.24 | 8.83 | 1.27 | 4098 | -- | -- |
| 295.46 | 0.801 | 9.88 | -0.433 | -- | -2.53 | -- | -2.33 | -0.206 | -- | 0.8661 | 8678 | -- | -- |
| 318.46 | 0.837 | 9.82 | -0.0153 | 0.276 | -- | -2.85 | -- | 0.137 | 11.8 | -- | -- | -- | -- |
| 340.2 | 0.864 | 9.82 | -0.145 | 0.587 | -- | -- | -- | 0.112 | 7.82 | -- | -- | -- | -- |
| 298.17 | 0.804 | 9.92 | -0.705 | -- | -1.93 | -- | -- | -0.25 | -- | 1.161 | 7257 | -- | -- |
| 288.54 | 0.791 | 9.87 | -- | 1.19 | -2.01 | -- | -- | -0.144 | 8.77 | 1.309 | 4075 | -- | -- |
| 358.85 | 0.885 | 9.83 | -0.138 | -- | -- | -- | -- | 0.12 | -- | -- | -- | -- | -- |
| 340.76 | 0.864 | 9.82 | -- | 0.586 | -- | -- | -- | 0.128 | 7.84 | -- | -- | -- | -- |
| 310 | 0.82 | 9.89 | -- | -- | -1.67 | -- | -- | -0.132 | -- | 1.38 | 7270 | -- | -- |
| 359.36 | 0.885 | 9.83 | -- | -- | -- | -- | -- | 0.136 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 248.47 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 2 | 248.53 | wind | 5 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 3 | 249.16 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 8 | 249.17 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 10 | 249.18 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 14 | 249.52 | wind | 9 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 15 | 249.59 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 16 | 249.80 | radiation | 1 | 4320 | > th | dose independent | rect. | 13 | 17 |
| 24 | 250.45 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 34 | 250.49 | wind | 5 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 35 | 250.68 | radiation | 1 | 4320 | < th | dose independent | rect. | 13 | 17 |
| 40 | 250.99 | wind | 5 | 14400 | > th | dose independent | rect. | 10 | 4 |
| 42 | 251.07 | wind | 9 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 44 | 251.13 | radiation | 1 | 4320 | < th | dose dependent | rect. | 12 | 18 |
| 46 | 251.20 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 47 | 251.20 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 48 | 251.22 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 59 | 251.30 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 61 | 251.30 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 8 | 3 |
| 63 | 251.31 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 3 | 10 |
| 68 | 251.33 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 73 | 251.33 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 3 | 10 |
| 77 | 251.33 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 6 | 6 |
| 86 | 251.34 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 24 | 12 |
| 91 | 251.35 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 136 | 251.44 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 143 | 251.44 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 1 | 3 |
| 154 | 251.46 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 24 | 5 |
| 156 | 251.47 | atmosphere | 1015 | 14400 | < th | dose independent | sin | 5 | NA |
| 177 | 251.53 | atmosphere | 1015 | 14400 | > th | dose independent | sin | 5 | NA |
| 202 | 251.61 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 204 | 251.61 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 237 | 251.62 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 1 | 6 |
| 272 | 251.64 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 310 | 251.83 | wind | 9 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 318 | 251.85 | atmosphere | 1015 | 14400 | > th | dose dependent | sin | 6 | NA |
| 319 | 251.85 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 393 | 252.12 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 18 | 18 |
| 407 | 252.16 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 489 | 252.37 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 9 |
| 538 | 252.50 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 7 |
| 548 | 252.52 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 658 | 252.86 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 711 | 253.01 | radiation | 1 | 4320 | > th | dose independent | rect. | 13 | 6 |
| 727 | 253.03 | radiation | 1 | 4320 | > th | dose independent | sin | 15 | NA |
| 770 | 253.14 | atmosphere | 1015 | 14400 | > th | dose independent | no | NA | NA |
| 788 | 253.19 | atmosphere | 1015 | 14400 | < th | dose independent | no | NA | NA |
| 848 | 253.34 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 4 | 23 |
| 875 | 253.39 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 8 | 23 |
| 882 | 253.40 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 10 | 23 |
| 957 | 253.64 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 3 |