BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0146800 Os04g0146800|J090029H11
         (230 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0146800  Hypothetical protein                                212   2e-55
Os01g0762000  Patatin family protein                               81   8e-16

>Os04g0146800 Hypothetical protein
          Length = 230

 Score =  212 bits (539), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 117/209 (55%), Positives = 117/209 (55%)

Query: 22  AAGIGDEXXXXXXXXXXXXXXXAYSSLTAYCVXXXXXXXXXXXXXXXXXXXXXXXXXXXX 81
           AAGIGDE               AYSSLTAYCV                            
Sbjct: 22  AAGIGDESVRRRPPPPSPLVVPAYSSLTAYCVASVSAGARLGSGGSAADSAPGPRAARSR 81

Query: 82  XXXXXXXXXXXXXXXXXXXXXXXXGFLEARGGPSAGVVCILAQVLAEHDARHSHLXXXXX 141
                                   GFLEARGGPSAGVVCILAQVLAEHDARHSHL     
Sbjct: 82  GGSPRAARRRSSLPRRLCRRAPASGFLEARGGPSAGVVCILAQVLAEHDARHSHLRGARR 141

Query: 142 XXXXXXXXINANLYVKELMRKKLRELRHRCQEGSLGDNVFCVRADLLRNLGNTCNSKIHX 201
                   INANLYVKELMRKKLRELRHRCQEGSLGDNVFCVRADLLRNLGNTCNSKIH 
Sbjct: 142 ADAGPRDPINANLYVKELMRKKLRELRHRCQEGSLGDNVFCVRADLLRNLGNTCNSKIHN 201

Query: 202 XXXXXXXXXXXYMHQSRKEEYEQESKTCR 230
                      YMHQSRKEEYEQESKTCR
Sbjct: 202 RWGRGGCRRNGYMHQSRKEEYEQESKTCR 230



>Os01g0762000 Patatin family protein
          Length = 998

 Score = 80.9 bits (198), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 37/50 (74%), Positives = 44/50 (88%)

Query: 151 NANLYVKELMRKKLRELRHRCQEGSLGDNVFCVRADLLRNLGNTCNSKIH 200
           +A+LY +EL+R KLRELRHR QEGSL D VFC+RADLLRNLGN CNS++H
Sbjct: 132 DADLYDEELVRNKLRELRHRRQEGSLRDIVFCMRADLLRNLGNMCNSELH 181



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,716,416
Number of extensions: 88665
Number of successful extensions: 129
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 2
Length of query: 230
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 133
Effective length of database: 11,971,043
Effective search space: 1592148719
Effective search space used: 1592148719
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)