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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0146800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.42 (0.0246) R2 : 0.282
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.2 (0.165) R2dE : 0.295 R2E : 0.272
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.117 (0.0528) R2dN8 : 0.0102 R2N8 : -0.013
σ : 0.459
deviance : 97.32
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 9.117
memory length : 41
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.12
open length of G : 23.5

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
92.27 0.451 3.41 -0.219 0.226 -1.84 -0.23 4.91 -0.138 9.83 9.103 42 3.06 23.2
93.67 0.451 3.42 -0.126 0.218 -2.16 -0.142 -- -0.0992 9.92 9.2 41 3.02 23.4
92.47 0.448 3.41 -0.222 0.226 -1.84 -- 4.96 -0.138 9.78 9.151 42 3.06 23.2
93.71 0.451 3.42 -0.14 0.222 -2.19 -- -- -0.121 9.64 9.195 41 3.15 23.4
95.54 0.455 3.42 -0.233 -- -1.79 -- 5.18 -0.135 -- 9.137 41 3.06 23.2
130.98 0.537 3.39 -0.192 0.239 -- -0.316 -- 0.00883 7.82 -- -- -- --
131.27 0.537 3.39 -0.2 0.239 -- -- -- 0.0092 7.83 -- -- -- --
96.78 0.458 3.43 -0.149 -- -2.2 -- -- -0.138 -- 9.13 41 3.08 23.4
94.21 0.452 3.42 -- 0.221 -2.24 -- -- -0.122 9.91 9.166 42 3.12 23.4
134.36 0.542 3.4 -0.198 -- -- -- -- 0.0125 -- -- -- -- --
132.33 0.538 3.38 -- 0.237 -- -- -- 0.0315 7.89 -- -- -- --
97.32 0.459 3.42 -- -- -2.2 -- -- -0.117 -- 9.117 41 3.12 23.5
135.39 0.543 3.39 -- -- -- -- -- 0.0344 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 93.11 wind 9.0 30 < th dose independent rect. 3 23
2 93.76 atmosphere 995.0 30 > th dose independent rect. 3 23
3 93.89 wind 3.0 30 < th dose independent rect. 2 1
4 93.92 wind 5.0 30 < th dose dependent rect. 2 1
10 93.94 atmosphere 1005.0 30 > th dose dependent rect. 2 1
11 93.96 temperature 15.0 30 > th dose dependent rect. 2 1
14 93.97 atmosphere 1015.0 30 < th dose dependent rect. 2 1
15 93.98 temperature 20.0 30 > th dose independent rect. 2 1
18 93.99 temperature 10.0 30 > th dose independent rect. 2 1
20 93.99 temperature 30.0 30 < th dose independent rect. 2 1
21 93.99 humidity 50.0 30 > th dose independent rect. 2 1
24 93.99 atmosphere 995.0 30 > th dose independent rect. 2 1
25 93.99 atmosphere 1010.0 30 < th dose independent rect. 2 1
27 93.99 radiation 1.0 30 < th dose independent rect. 2 1
32 93.99 precipitation 0.1 30 < th dose independent rect. 2 1
33 93.99 temperature 10.0 30 > th dose independent rect. 3 23
34 93.99 radiation 1.0 30 < th dose dependent rect. 2 1
39 93.99 precipitation 0.1 30 < th dose dependent rect. 2 1
40 94.00 humidity 50.0 30 > th dose dependent rect. 2 1
47 94.04 humidity 90.0 30 > th dose independent rect. 2 1
50 94.05 atmosphere 1005.0 30 > th dose independent rect. 2 1
55 94.13 temperature 30.0 30 < th dose dependent rect. 2 1
56 94.13 radiation 1.0 43200 < th dose dependent rect. 3 1
66 94.35 wind 1.0 30 > th dose independent rect. 2 1
107 94.71 precipitation 0.1 30 < th dose independent rect. 3 23
108 94.71 precipitation 0.1 30 < th dose dependent rect. 3 23
131 95.67 wind 9.0 1440 < th dose independent rect. 3 1
132 95.67 temperature 10.0 1440 > th dose independent rect. 3 1
135 95.67 temperature 30.0 1440 < th dose independent rect. 3 1
139 95.67 humidity 50.0 1440 > th dose independent rect. 3 1
148 95.67 atmosphere 995.0 1440 > th dose independent rect. 3 1
149 95.67 radiation 1.0 1440 < th dose independent rect. 3 1
169 95.67 temperature 10.0 1440 > th dose independent rect. 4 23
192 101.60 humidity 50.0 30 > th dose independent rect. 3 23
258 109.15 atmosphere 1015.0 30 < th dose independent rect. 3 23
261 109.38 temperature 25.0 270 > th dose independent rect. 23 4
275 110.37 humidity 90.0 90 < th dose independent rect. 2 1
286 111.44 wind 1.0 10 < th dose independent rect. 14 13
289 111.51 wind 1.0 10 < th dose independent rect. 17 10
292 111.55 wind 1.0 10 < th dose independent rect. 21 6
321 112.63 temperature 10.0 30 > th dose dependent rect. 3 23
324 112.64 wind 9.0 30 < th dose dependent rect. 3 23
328 112.91 temperature 30.0 30 < th dose independent rect. 3 23
376 113.70 wind 1.0 10 < th dose independent rect. 8 19
384 114.12 atmosphere 1015.0 1440 < th dose independent rect. 3 1
407 114.76 atmosphere 1015.0 720 < th dose independent rect. 3 8
437 115.43 wind 9.0 720 < th dose independent rect. 3 8
443 115.64 wind 1.0 10 > th dose independent sin 16 NA
457 116.08 precipitation 0.1 720 < th dose independent rect. 3 8
459 116.08 precipitation 0.1 720 < th dose dependent rect. 3 8
469 116.31 precipitation 0.1 720 < th dose independent rect. 15 8
470 116.31 precipitation 0.1 720 < th dose dependent rect. 15 8
479 116.45 humidity 90.0 90 < th dose independent rect. 1 4
480 116.45 temperature 10.0 720 > th dose independent rect. 3 8
481 116.45 temperature 10.0 720 > th dose independent rect. 15 8
482 116.45 atmosphere 995.0 720 > th dose independent rect. 3 8
483 116.45 temperature 10.0 720 > th dose independent rect. 11 16
484 116.45 temperature 10.0 720 > th dose independent rect. 23 16
491 116.59 wind 1.0 30 > th dose dependent rect. 2 1
492 116.63 humidity 50.0 720 > th dose independent rect. 3 8
496 116.74 precipitation 0.1 720 < th dose independent rect. 23 16
497 116.74 precipitation 0.1 720 < th dose dependent rect. 23 16
498 116.77 humidity 90.0 10 > th dose independent rect. 24 3
499 116.82 atmosphere 995.0 720 > th dose independent rect. 23 16
501 116.84 wind 1.0 30 > th dose independent rect. 3 23
536 117.81 wind 3.0 30 < th dose dependent rect. 22 5
543 117.95 precipitation 0.1 720 < th dose independent rect. 11 16
544 117.95 precipitation 0.1 720 < th dose dependent rect. 11 16
562 118.31 radiation 40.0 30 < th dose independent rect. 3 23
566 118.41 atmosphere 995.0 720 > th dose independent rect. 11 16
568 118.43 wind 3.0 30 < th dose dependent rect. 20 7
599 118.59 atmosphere 995.0 720 > th dose independent rect. 15 8
657 119.37 atmosphere 1015.0 720 < th dose independent rect. 3 16
663 119.40 radiation 40.0 30 < th dose dependent rect. 3 23
670 119.47 wind 3.0 30 < th dose dependent rect. 13 14
686 119.64 atmosphere 1015.0 720 < th dose independent rect. 3 12
713 119.70 radiation 40.0 720 < th dose independent rect. 15 8
722 119.76 wind 9.0 720 < th dose independent rect. 23 16
783 120.07 wind 9.0 720 < th dose dependent rect. 2 1
813 120.43 wind 1.0 10 > th dose independent no NA NA
814 120.43 wind 1.0 720 > th dose independent rect. 15 8
829 120.51 temperature 15.0 90 > th dose independent rect. 3 8
833 120.53 wind 1.0 10 < th dose independent sin 16 NA
835 120.55 wind 9.0 720 < th dose independent rect. 3 12
874 120.57 precipitation 0.1 720 < th dose independent rect. 3 12
887 120.57 precipitation 0.1 720 < th dose dependent rect. 3 12
907 120.64 precipitation 0.1 720 < th dose independent rect. 7 8
910 120.64 atmosphere 1000.0 10 > th dose independent rect. 14 12
912 120.64 temperature 10.0 90 > th dose dependent rect. 3 8
913 120.64 precipitation 0.1 720 < th dose dependent rect. 7 8
928 120.77 atmosphere 995.0 720 > th dose independent rect. 3 12
929 120.77 precipitation 0.1 720 < th dose independent rect. 3 16
931 120.77 precipitation 0.1 720 < th dose dependent rect. 3 16
932 120.78 humidity 50.0 30 > th dose dependent rect. 3 23
933 120.79 precipitation 0.1 720 < th dose independent rect. 15 12
935 120.79 precipitation 0.1 720 < th dose dependent rect. 15 12
936 120.80 wind 1.0 10 > th dose independent rect. 23 12
937 120.80 precipitation 0.1 720 < th dose independent rect. 3 22
940 120.80 precipitation 0.1 720 < th dose dependent rect. 3 22
966 120.85 humidity 90.0 270 < th dose independent rect. 23 4
977 120.94 wind 1.0 10 > th dose independent rect. 14 21
981 120.97 atmosphere 995.0 720 > th dose independent rect. 13 2
982 120.97 radiation 40.0 90 < th dose dependent rect. 11 16
990 121.03 atmosphere 995.0 720 > th dose independent rect. 7 8