BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0146800 Os04g0146800|J090029H11
         (230 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G04040.1  | chr5:1090346-1093003 FORWARD LENGTH=826             74   5e-14
AT3G57140.1  | chr3:21150742-21153315 REVERSE LENGTH=802           64   8e-11

>AT5G04040.1 | chr5:1090346-1093003 FORWARD LENGTH=826
          Length = 825

 Score = 74.3 bits (181), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/49 (65%), Positives = 43/49 (87%)

Query: 152 ANLYVKELMRKKLRELRHRCQEGSLGDNVFCVRADLLRNLGNTCNSKIH 200
           ++LY +EL++ KL+ELRHR QEGSL D +FC+RADL+RNLGN CNS++H
Sbjct: 131 SDLYDEELVKNKLQELRHRRQEGSLRDIMFCMRADLVRNLGNMCNSELH 179



>AT3G57140.1 | chr3:21150742-21153315 REVERSE LENGTH=802
          Length = 801

 Score = 63.5 bits (153), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/48 (58%), Positives = 37/48 (77%)

Query: 153 NLYVKELMRKKLRELRHRCQEGSLGDNVFCVRADLLRNLGNTCNSKIH 200
           +L+  EL+  KL EL+HR  EGSL D +FC+RADL+RNLGN CN ++H
Sbjct: 133 DLFDVELVSNKLDELKHRRHEGSLRDIIFCMRADLVRNLGNMCNPELH 180



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,354,350
Number of extensions: 58872
Number of successful extensions: 60
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 2
Length of query: 230
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 135
Effective length of database: 8,502,049
Effective search space: 1147776615
Effective search space used: 1147776615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)