BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0137500 Os04g0137500|003-115-B03
         (102 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0824700  Similar to Vacuolar ATP synthase subunit F (EC...   208   7e-55
Os04g0137500  Similar to Vacuolar ATP synthase subunit F (EC...   207   1e-54

>Os02g0824700 Similar to Vacuolar ATP synthase subunit F (EC 3.6.3.14) (V-ATPase
           F subunit) (Vacuolar proton pump F subunit) (V-ATPase 14
           kDa subunit)
          Length = 130

 Score =  208 bits (530), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 102/102 (100%), Positives = 102/102 (100%)

Query: 1   LAGVGNVDLRKKTNYLIVDNKTTVKQIEDAFKEFTTREDIAIVLISQYVANMIRFLVDSY 60
           LAGVGNVDLRKKTNYLIVDNKTTVKQIEDAFKEFTTREDIAIVLISQYVANMIRFLVDSY
Sbjct: 29  LAGVGNVDLRKKTNYLIVDNKTTVKQIEDAFKEFTTREDIAIVLISQYVANMIRFLVDSY 88

Query: 61  NRPVPAILEIPSKDHPYDPAHDSVLSRVKYLFSAESVASDRR 102
           NRPVPAILEIPSKDHPYDPAHDSVLSRVKYLFSAESVASDRR
Sbjct: 89  NRPVPAILEIPSKDHPYDPAHDSVLSRVKYLFSAESVASDRR 130



>Os04g0137500 Similar to Vacuolar ATP synthase subunit F (EC 3.6.3.14) (V-ATPase
           F subunit) (Vacuolar proton pump F subunit) (V-ATPase 14
           kDa subunit)
          Length = 102

 Score =  207 bits (527), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 102/102 (100%), Positives = 102/102 (100%)

Query: 1   LAGVGNVDLRKKTNYLIVDNKTTVKQIEDAFKEFTTREDIAIVLISQYVANMIRFLVDSY 60
           LAGVGNVDLRKKTNYLIVDNKTTVKQIEDAFKEFTTREDIAIVLISQYVANMIRFLVDSY
Sbjct: 1   LAGVGNVDLRKKTNYLIVDNKTTVKQIEDAFKEFTTREDIAIVLISQYVANMIRFLVDSY 60

Query: 61  NRPVPAILEIPSKDHPYDPAHDSVLSRVKYLFSAESVASDRR 102
           NRPVPAILEIPSKDHPYDPAHDSVLSRVKYLFSAESVASDRR
Sbjct: 61  NRPVPAILEIPSKDHPYDPAHDSVLSRVKYLFSAESVASDRR 102



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.135    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,968,456
Number of extensions: 98368
Number of successful extensions: 214
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 2
Length of query: 102
Length of database: 17,035,801
Length adjustment: 70
Effective length of query: 32
Effective length of database: 13,380,821
Effective search space: 428186272
Effective search space used: 428186272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)