Os04g0137500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Vacuolar ATP synthase subunit F (EC 3.6.3.14) (V-ATPase F subunit) (Vacuolar proton pump F subunit) (V-ATPase 14 kDa subunit).
FiT-DB / Search/ Help/ Sample detail
|
Os04g0137500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Vacuolar ATP synthase subunit F (EC 3.6.3.14) (V-ATPase F subunit) (Vacuolar proton pump F subunit) (V-ATPase 14 kDa subunit).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30 | 0.257 | 10.6 | 0.179 | 0.224 | 0.363 | 0.0991 | -5.02 | -0.168 | 6.21 | 29.7 | 4063 | -- | -- |
| 34.04 | 0.274 | 10.8 | -0.711 | 0.231 | 0.0735 | 0.0857 | -- | -0.303 | 6.33 | 29.7 | 4063 | -- | -- |
| 30 | 0.255 | 10.6 | 0.201 | 0.224 | 0.359 | -- | -4.98 | -0.152 | 6.12 | 29.58 | 4010 | -- | -- |
| 33.16 | 0.268 | 10.7 | -0.683 | 0.195 | -0.146 | -- | -- | -0.321 | 5.53 | 32.42 | 11652 | -- | -- |
| 32.57 | 0.266 | 10.6 | 0.236 | -- | 0.365 | -- | -5.13 | -0.148 | -- | 29.6 | 4062 | -- | -- |
| 34.24 | 0.274 | 10.8 | -0.722 | 0.248 | -- | 0.116 | -- | -0.303 | 5.99 | -- | -- | -- | -- |
| 34.28 | 0.274 | 10.8 | -0.721 | 0.248 | -- | -- | -- | -0.304 | 5.99 | -- | -- | -- | -- |
| 35.02 | 0.276 | 10.8 | -0.801 | -- | -0.244 | -- | -- | -0.39 | -- | 32.5 | 12896 | -- | -- |
| 40.28 | 0.296 | 10.7 | -- | 0.248 | 0.405 | -- | -- | -0.0644 | 5.85 | 26.3 | 47520 | -- | -- |
| 37.48 | 0.286 | 10.8 | -0.714 | -- | -- | -- | -- | -0.298 | -- | -- | -- | -- | -- |
| 47.97 | 0.324 | 10.7 | -- | 0.238 | -- | -- | -- | -0.224 | 6.14 | -- | -- | -- | -- |
| 43.46 | 0.307 | 10.7 | -- | -- | 0.397 | -- | -- | -0.0625 | -- | 26.27 | 47520 | -- | -- |
| 50.91 | 0.333 | 10.7 | -- | -- | -- | -- | -- | -0.219 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.13 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 5 | 29.78 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 7 | 29.86 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 10 |
| 9 | 29.89 | radiation | 40 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 20 | 29.98 | humidity | 70 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 26 | 30.04 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 2 |
| 27 | 30.05 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 19 |
| 28 | 30.06 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 31 | 30.07 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 16 |
| 32 | 30.09 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 5 |
| 46 | 30.13 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 61 | 30.20 | humidity | 60 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 81 | 30.22 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 83 | 30.23 | temperature | 25 | 1440 | > th | dose dependent | rect. | 1 | 7 |
| 84 | 30.24 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 85 | 30.24 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 15 |
| 89 | 30.25 | humidity | 70 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 91 | 30.25 | humidity | 50 | 14400 | > th | dose independent | rect. | 17 | 17 |
| 94 | 30.26 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 95 | 30.26 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 103 | 30.26 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 12 |
| 111 | 30.27 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 10 |
| 116 | 30.28 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 7 |
| 120 | 30.29 | temperature | 25 | 1440 | > th | dose dependent | rect. | 4 | 4 |
| 124 | 30.31 | temperature | 30 | 4320 | < th | dose independent | rect. | 18 | 21 |
| 132 | 30.33 | radiation | 40 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 133 | 30.33 | temperature | 30 | 4320 | < th | dose independent | rect. | 10 | 5 |
| 150 | 30.36 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 7 |
| 169 | 30.36 | temperature | 30 | 4320 | < th | dose independent | rect. | 22 | 17 |
| 199 | 30.39 | radiation | 40 | 4320 | < th | dose independent | rect. | 23 | 13 |
| 203 | 30.39 | radiation | 40 | 4320 | < th | dose independent | rect. | 16 | 20 |
| 220 | 30.40 | radiation | 40 | 4320 | < th | dose independent | rect. | 4 | 8 |
| 262 | 30.41 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 6 |
| 288 | 30.43 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 19 |
| 322 | 30.45 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 19 |
| 348 | 30.48 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 23 |
| 366 | 30.49 | radiation | 30 | 4320 | > th | dose independent | rect. | 9 | 3 |
| 379 | 30.51 | temperature | 30 | 4320 | < th | dose independent | sin | 1 | NA |
| 389 | 30.52 | temperature | 30 | 4320 | < th | dose independent | sin | 23 | NA |
| 391 | 30.52 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 400 | 30.52 | temperature | 30 | 4320 | < th | dose independent | rect. | 10 | 9 |
| 439 | 30.52 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 23 |
| 446 | 30.53 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 447 | 30.53 | temperature | 25 | 4320 | < th | dose independent | rect. | 4 | 3 |
| 462 | 30.53 | temperature | 30 | 4320 | < th | dose independent | rect. | 7 | 12 |
| 470 | 30.53 | temperature | 30 | 4320 | < th | dose independent | rect. | 7 | 15 |
| 481 | 30.53 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 18 |
| 492 | 30.53 | temperature | 30 | 4320 | < th | dose independent | rect. | 7 | 22 |
| 495 | 30.53 | temperature | 30 | 4320 | < th | dose independent | rect. | 20 | 23 |
| 500 | 30.54 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 501 | 30.54 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 504 | 30.54 | temperature | 25 | 4320 | > th | dose independent | rect. | 4 | 3 |
| 617 | 30.55 | temperature | 30 | 4320 | > th | dose independent | sin | 0 | NA |
| 625 | 30.55 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 8 |
| 673 | 30.56 | temperature | 30 | 4320 | > th | dose independent | sin | 22 | NA |
| 676 | 30.56 | radiation | 40 | 4320 | < th | dose independent | sin | 5 | NA |
| 679 | 30.56 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 6 |
| 684 | 30.56 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 9 |
| 711 | 30.57 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 6 |
| 715 | 30.57 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 9 |
| 723 | 30.57 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 14 |
| 726 | 30.57 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 16 |
| 730 | 30.57 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 20 |
| 751 | 30.58 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |
| 953 | 30.61 | humidity | 60 | 4320 | < th | dose independent | rect. | 13 | 1 |