BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0136900 Os04g0136900|AK067888
(354 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0136900 Conserved hypothetical protein 717 0.0
Os09g0549400 Conserved hypothetical protein 103 2e-22
>Os04g0136900 Conserved hypothetical protein
Length = 354
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/354 (100%), Positives = 354/354 (100%)
Query: 1 MPASDKQLASTVKKVTSRELPKKGADIVNMSQGTSPLPKDKGTATEPGKTVGTKRSDAPS 60
MPASDKQLASTVKKVTSRELPKKGADIVNMSQGTSPLPKDKGTATEPGKTVGTKRSDAPS
Sbjct: 1 MPASDKQLASTVKKVTSRELPKKGADIVNMSQGTSPLPKDKGTATEPGKTVGTKRSDAPS 60
Query: 61 SPGYHNVYVRRKVENDHSKVSSSQEVKGNGRDKTKEQETQQNVQHDQTNKPEVSSSVAVQ 120
SPGYHNVYVRRKVENDHSKVSSSQEVKGNGRDKTKEQETQQNVQHDQTNKPEVSSSVAVQ
Sbjct: 61 SPGYHNVYVRRKVENDHSKVSSSQEVKGNGRDKTKEQETQQNVQHDQTNKPEVSSSVAVQ 120
Query: 121 HDQSNKPDLSSSVAVQHDQTNKPELSSSVAVQHDQSNKPDLSSSVAVQHDQTNKPEWPSS 180
HDQSNKPDLSSSVAVQHDQTNKPELSSSVAVQHDQSNKPDLSSSVAVQHDQTNKPEWPSS
Sbjct: 121 HDQSNKPDLSSSVAVQHDQTNKPELSSSVAVQHDQSNKPDLSSSVAVQHDQTNKPEWPSS 180
Query: 181 VAVQHDQTNKPELPSSVAVQHDQTNKPELPSSVAVQHDQTNKPELPSSVAESGGIVSPKS 240
VAVQHDQTNKPELPSSVAVQHDQTNKPELPSSVAVQHDQTNKPELPSSVAESGGIVSPKS
Sbjct: 181 VAVQHDQTNKPELPSSVAVQHDQTNKPELPSSVAVQHDQTNKPELPSSVAESGGIVSPKS 240
Query: 241 PEKTNEQIVNKKNEPPVAPGTTVQDDTHKSSNQYWNARFNRLQTYLESCDRSTQEGYMRM 300
PEKTNEQIVNKKNEPPVAPGTTVQDDTHKSSNQYWNARFNRLQTYLESCDRSTQEGYMRM
Sbjct: 241 PEKTNEQIVNKKNEPPVAPGTTVQDDTHKSSNQYWNARFNRLQTYLESCDRSTQEGYMRM 300
Query: 301 LRSLSAADRSMHAIDLEKRAIHLLVEEGKELQRMKALNVLGKVSPNGPSKQAPL 354
LRSLSAADRSMHAIDLEKRAIHLLVEEGKELQRMKALNVLGKVSPNGPSKQAPL
Sbjct: 301 LRSLSAADRSMHAIDLEKRAIHLLVEEGKELQRMKALNVLGKVSPNGPSKQAPL 354
>Os09g0549400 Conserved hypothetical protein
Length = 425
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 60/80 (75%)
Query: 266 DTHKSSNQYWNARFNRLQTYLESCDRSTQEGYMRMLRSLSAADRSMHAIDLEKRAIHLLV 325
D +SSNQ W RF RLQ +L + ++S QE Y+ MLRSLS+ RS AI+LE RA+ LL+
Sbjct: 325 DPQRSSNQDWKERFIRLQAFLRNNEQSGQEEYIHMLRSLSSVGRSKLAIELENRAVKLLI 384
Query: 326 EEGKELQRMKALNVLGKVSP 345
EEGKELQ+MK LNVL K+SP
Sbjct: 385 EEGKELQKMKVLNVLNKLSP 404
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.303 0.119 0.326
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,433,845
Number of extensions: 546869
Number of successful extensions: 1426
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1411
Number of HSP's successfully gapped: 3
Length of query: 354
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 252
Effective length of database: 11,709,973
Effective search space: 2950913196
Effective search space used: 2950913196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 156 (64.7 bits)