Os04g0136900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0136900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.11 | 0.205 | 11.3 | 0.378 | 0.0941 | 0.401 | -0.331 | -0.791 | -0.497 | 14.5 | 19.3 | 1298 | -- | -- |
| 19.95 | 0.208 | 11.3 | 0.303 | 0.0806 | 0.593 | -0.416 | -- | -0.518 | 14.4 | 18.9 | 1295 | -- | -- |
| 19.39 | 0.205 | 11.3 | 0.386 | 0.0902 | 0.376 | -- | -0.83 | -0.493 | 15.4 | 19.4 | 1146 | -- | -- |
| 20.47 | 0.211 | 11.3 | 0.281 | 0.0835 | 0.612 | -- | -- | -0.52 | 15.4 | 19 | 1226 | -- | -- |
| 19.79 | 0.207 | 11.3 | 0.382 | -- | 0.39 | -- | -0.813 | -0.499 | -- | 19.5 | 1138 | -- | -- |
| 24.85 | 0.234 | 11.4 | 0.0831 | 0.117 | -- | -0.443 | -- | -0.608 | 14.6 | -- | -- | -- | -- |
| 25.55 | 0.237 | 11.4 | 0.0717 | 0.116 | -- | -- | -- | -0.611 | 14.7 | -- | -- | -- | -- |
| 20.82 | 0.213 | 11.3 | 0.277 | -- | 0.613 | -- | -- | -0.522 | -- | 18.95 | 1144 | -- | -- |
| 22.11 | 0.219 | 11.3 | -- | 0.083 | 0.452 | -- | -- | -0.569 | 15.6 | 18.98 | 1127 | -- | -- |
| 26.33 | 0.24 | 11.4 | 0.0667 | -- | -- | -- | -- | -0.614 | -- | -- | -- | -- | -- |
| 25.69 | 0.237 | 11.4 | -- | 0.115 | -- | -- | -- | -0.619 | 14.7 | -- | -- | -- | -- |
| 22.49 | 0.221 | 11.3 | -- | -- | 0.467 | -- | -- | -0.569 | -- | 19 | 1111 | -- | -- |
| 26.45 | 0.24 | 11.4 | -- | -- | -- | -- | -- | -0.621 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.85 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 2 | 19.05 | humidity | 90 | 14400 | > th | dose dependent | rect. | 1 | 13 |
| 4 | 19.06 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 11 |
| 13 | 19.10 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 7 |
| 22 | 19.14 | humidity | 90 | 14400 | > th | dose dependent | sin | 5 | NA |
| 37 | 19.20 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 56 | 19.26 | humidity | 50 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 57 | 19.26 | humidity | 50 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 60 | 19.27 | humidity | 50 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 62 | 19.27 | humidity | 90 | 14400 | > th | dose dependent | rect. | 11 | 19 |
| 67 | 19.28 | temperature | 10 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 79 | 19.30 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 7 |
| 80 | 19.30 | temperature | 20 | 1440 | > th | dose independent | rect. | 16 | 9 |
| 81 | 19.30 | temperature | 20 | 1440 | < th | dose independent | rect. | 16 | 9 |
| 89 | 19.31 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 7 |
| 91 | 19.31 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 19 |
| 112 | 19.32 | humidity | 90 | 43200 | < th | dose dependent | rect. | 17 | 8 |
| 153 | 19.35 | humidity | 90 | 43200 | < th | dose dependent | rect. | 18 | 6 |
| 248 | 19.39 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 12 |
| 249 | 19.39 | humidity | 90 | 43200 | < th | dose dependent | sin | 14 | NA |
| 265 | 19.39 | humidity | 50 | 43200 | > th | dose dependent | rect. | 17 | 19 |
| 276 | 19.40 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 21 |
| 297 | 19.41 | temperature | 20 | 1440 | > th | dose independent | sin | 16 | NA |
| 298 | 19.41 | temperature | 20 | 1440 | < th | dose independent | sin | 16 | NA |
| 301 | 19.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 21 |
| 304 | 19.41 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 325 | 19.42 | temperature | 20 | 1440 | < th | dose independent | rect. | 16 | 21 |
| 385 | 19.44 | temperature | 20 | 1440 | > th | dose independent | rect. | 16 | 21 |
| 415 | 19.45 | humidity | 70 | 43200 | > th | dose independent | rect. | 17 | 13 |
| 428 | 19.45 | temperature | 20 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 432 | 19.45 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 455 | 19.45 | humidity | 90 | 43200 | < th | dose dependent | rect. | 17 | 21 |
| 459 | 19.46 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 460 | 19.46 | humidity | 90 | 14400 | > th | dose independent | sin | 7 | NA |
| 469 | 19.46 | temperature | 20 | 1440 | > th | dose independent | rect. | 11 | 16 |
| 471 | 19.46 | temperature | 20 | 1440 | < th | dose independent | rect. | 10 | 17 |
| 485 | 19.46 | temperature | 20 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 490 | 19.46 | humidity | 50 | 43200 | > th | dose dependent | sin | 15 | NA |
| 509 | 19.46 | humidity | 90 | 43200 | < th | dose dependent | rect. | 17 | 19 |
| 521 | 19.47 | temperature | 20 | 1440 | < th | dose independent | rect. | 11 | 15 |
| 541 | 19.47 | temperature | 20 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 545 | 19.47 | humidity | 90 | 14400 | > th | dose dependent | sin | 13 | NA |
| 565 | 19.48 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 601 | 19.48 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 13 |
| 657 | 19.49 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 23 |
| 684 | 19.50 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 7 |
| 756 | 19.51 | humidity | 70 | 43200 | < th | dose independent | rect. | 17 | 13 |
| 777 | 19.51 | humidity | 90 | 43200 | < th | dose dependent | no | NA | NA |
| 905 | 19.53 | humidity | 90 | 43200 | < th | dose dependent | rect. | 3 | 23 |
| 921 | 19.54 | humidity | 70 | 43200 | > th | dose independent | rect. | 13 | 17 |
| 981 | 19.55 | temperature | 10 | 4320 | > th | dose dependent | sin | 21 | NA |