Os09g0549400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0549400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.31 | 0.356 | 7.42 | 0.695 | 1.11 | -1.2 | -0.619 | -3 | 0.249 | 17.9 | 1016 | 4331 | -- | -- |
| 60.52 | 0.362 | 7.46 | 0.492 | 1.12 | -0.432 | -0.735 | -- | 0.188 | 17.8 | 1012 | 4271 | -- | -- |
| 58.23 | 0.355 | 7.42 | 0.705 | 1.1 | -1.18 | -- | -3.05 | 0.251 | 17.9 | 1016 | 4307 | -- | -- |
| 61.84 | 0.366 | 7.46 | 0.496 | 1.11 | -0.425 | -- | -- | 0.187 | 17.8 | 1012 | 4264 | -- | -- |
| 120.02 | 0.51 | 7.35 | 0.627 | -- | -2.96 | -- | -7.38 | 0.237 | -- | 1017 | 4387 | -- | -- |
| 65.35 | 0.379 | 7.44 | 0.586 | 1.1 | -- | -0.695 | -- | 0.263 | 17.8 | -- | -- | -- | -- |
| 66.54 | 0.382 | 7.44 | 0.591 | 1.09 | -- | -- | -- | 0.26 | 17.9 | -- | -- | -- | -- |
| 124.34 | 0.519 | 7.45 | 0.387 | -- | -0.343 | -- | -- | 0.144 | -- | 1012 | 8587 | -- | -- |
| 65.38 | 0.377 | 7.48 | -- | 1.08 | -0.486 | -- | -- | 0.0941 | 17.9 | 1011 | 7912 | -- | -- |
| 128.64 | 0.53 | 7.43 | 0.558 | -- | -- | -- | -- | 0.234 | -- | -- | -- | -- | -- |
| 75.74 | 0.407 | 7.46 | -- | 1.09 | -- | -- | -- | 0.194 | 17.9 | -- | -- | -- | -- |
| 125.16 | 0.521 | 7.47 | -- | -- | -0.556 | -- | -- | 0.0291 | -- | 1011 | 47520 | -- | -- |
| 136.85 | 0.546 | 7.44 | -- | -- | -- | -- | -- | 0.172 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.64 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 2 | 56.70 | humidity | 70 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 3 | 56.70 | temperature | 20 | 4320 | < th | dose dependent | rect. | 5 | 2 |
| 6 | 56.83 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 8 | 56.89 | radiation | 10 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 9 | 56.92 | humidity | 70 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 12 | 56.94 | wind | 9 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 30 | 57.04 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 37 | 57.13 | humidity | 70 | 4320 | > th | dose independent | rect. | 2 | 7 |
| 46 | 57.15 | humidity | 70 | 4320 | > th | dose independent | rect. | 4 | 5 |
| 48 | 57.15 | temperature | 20 | 4320 | < th | dose dependent | rect. | 2 | 1 |
| 49 | 57.15 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 59 | 57.20 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 5 | 4 |
| 66 | 57.21 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 13 | 9 |
| 67 | 57.22 | atmosphere | 1015 | 4320 | > th | dose dependent | sin | 18 | NA |
| 72 | 57.22 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 12 | 11 |
| 82 | 57.25 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 16 | 5 |
| 88 | 57.27 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 113 | 57.31 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 18 | 4 |
| 117 | 57.31 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 11 | 14 |
| 118 | 57.32 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 7 | 2 |
| 165 | 57.38 | radiation | 1 | 270 | < th | dose dependent | rect. | 4 | 14 |
| 216 | 57.43 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 14 | 19 |
| 229 | 57.45 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 257 | 57.47 | radiation | 10 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 315 | 57.50 | temperature | 20 | 4320 | < th | dose dependent | sin | 6 | NA |
| 317 | 57.50 | wind | 1 | 14400 | < th | dose dependent | rect. | 7 | 4 |
| 336 | 57.51 | radiation | 1 | 270 | < th | dose independent | rect. | 3 | 15 |
| 379 | 57.54 | radiation | 10 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 381 | 57.54 | temperature | 20 | 4320 | < th | dose independent | rect. | 23 | 8 |
| 399 | 57.55 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 23 | 12 |
| 424 | 57.56 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 23 | 12 |
| 431 | 57.56 | atmosphere | 1015 | 4320 | > th | dose dependent | no | NA | NA |
| 515 | 57.60 | wind | 1 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 564 | 57.62 | atmosphere | 1015 | 4320 | > th | dose independent | sin | 6 | NA |
| 587 | 57.63 | atmosphere | 1015 | 4320 | < th | dose independent | sin | 6 | NA |
| 597 | 57.63 | atmosphere | 1015 | 4320 | > th | dose dependent | sin | 7 | NA |
| 612 | 57.64 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 15 | 6 |
| 681 | 57.67 | temperature | 30 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 696 | 57.68 | humidity | 50 | 4320 | > th | dose independent | rect. | 13 | 2 |
| 699 | 57.68 | temperature | 20 | 4320 | > th | dose independent | rect. | 23 | 8 |
| 710 | 57.68 | wind | 9 | 43200 | > th | dose dependent | rect. | 15 | 2 |
| 750 | 57.70 | humidity | 50 | 4320 | < th | dose independent | rect. | 16 | 23 |
| 752 | 57.70 | temperature | 10 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 801 | 57.73 | wind | 1 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 812 | 57.73 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 6 | 20 |
| 829 | 57.74 | humidity | 50 | 4320 | < th | dose independent | rect. | 10 | 5 |
| 870 | 57.75 | humidity | 50 | 4320 | > th | dose independent | rect. | 5 | 5 |